Packages with Software Mentions in Scientific Papers

cran: likert

Analysis and Visualization Likert Items
Papers that mentioned: 13

Very Likely Science (100)

bioconductor: SPEM

S-system parameter estimation method
Papers that mentioned: 13

Very Likely Science (98)

pypi: likert

Tools to analyze Likert scale data
Papers that mentioned: 13

Very Likely Science (65)

bioconductor: RSVSim

RSVSim: an R/Bioconductor package for the simulation of structural variations
Papers that mentioned: 13

Very Likely Science (100)

A mid stack Flask based framework that put structure in the file system. Features: Caching, Mailing, Storage, CSRF, recaptcha, Cors. Supports HTML, Markdown and Jade and more
Papers that mentioned: 13

Very Likely Science (65)

cran: gmt

Interface Between GMT Map-Making Software and R
Papers that mentioned: 13

Very Likely Science (75)

pypi: kernel

UNKNOWN
Papers that mentioned: 13

Very Likely Science (80)

cran: emdbook

Support Functions and Data for "Ecological Models and Data"
Papers that mentioned: 13

Very Likely Science (85)

pypi: cons

An implementation of Lisp/Scheme-like cons in Python.
Papers that mentioned: 13

Very Likely Science (80)

bioconductor: Rcpi

Molecular Informatics Toolkit for Compound-Protein Interaction in Drug Discovery
Papers that mentioned: 13

Very Likely Science (100)

cran: CHNOSZ

Thermodynamic Calculations and Diagrams for Geochemistry
Papers that mentioned: 13

Very Likely Science (85)

cran: generalhoslem

Goodness of Fit Tests for Logistic Regression Models
Papers that mentioned: 13

Very Likely Science (93)

bioconductor: scde

Single Cell Differential Expression
Papers that mentioned: 13

Very Likely Science (100)

pypi: Orpheus

An intelligent music retrieval engine
Papers that mentioned: 13

Likely Science (40)

pypi: hmmlearn

Hidden Markov Models in Python with scikit-learn like API
Papers that mentioned: 13

Very Likely Science (100)

pypi: pcap

packet capture library
Papers that mentioned: 13

Very Likely Science (65)

cran: yarrr

A Companion to the e-Book "YaRrr!: The Pirate's Guide to R"
Papers that mentioned: 13

Very Likely Science (75)

pypi: dp

Automatically transform recursive functions to dynamic programming
Papers that mentioned: 13

Very Likely Science (65)

cran: R.utils

Various Programming Utilities
Papers that mentioned: 13

Very Likely Science (75)

cran: SHELF

Tools to Support the Sheffield Elicitation Framework
Papers that mentioned: 13

Very Likely Science (100)

pypi: proc

Simple interface to Linux process information
Papers that mentioned: 13

Very Likely Science (65)

pypi: ESN

Multiple Layer ESN
Papers that mentioned: 13

Very Likely Science (65)

pypi: Zope

Zope application server / web framework
Papers that mentioned: 13

Very Likely Science (65)

cran: sensitivity

Global Sensitivity Analysis of Model Outputs
Papers that mentioned: 13

Very Likely Science (85)

pypi: short

A simple short implementation for Python3
Papers that mentioned: 13

Very Likely Science (65)

pypi: simulate

HuggingFace community-driven open-source library of simulation environments
Papers that mentioned: 13

Very Likely Science (100)

pypi: ImmuneDB

A system for the analysis and exploration of high-throughput adaptive immune receptor sequencing data
Papers that mentioned: 13

Very Likely Science (100)

pypi: sensitivity

Python Sensitivity Analysis - Gradient DataFrames and Hex-Bin Plots
Papers that mentioned: 13

Very Likely Science (75)

pypi: MADAM

Digital asset management library
Papers that mentioned: 13

Very Likely Science (80)

cran: SpadeR

Species-Richness Prediction and Diversity Estimation with R
Papers that mentioned: 13

Very Likely Science (83)

pypi: SLIP

SLIP: a Simple Library for Image Processing
Papers that mentioned: 13

Very Likely Science (100)

pypi: expresso

A symbolic expression manipulation library.
Papers that mentioned: 13

Very Likely Science (90)

pypi: Arrays

Python library for storing and reading stored arrays.
Papers that mentioned: 13

Very Likely Science (65)

cran: JMI

Jackknife Mutual Information
Papers that mentioned: 13

Very Likely Science (83)

pypi: cuda

Papers that mentioned: 13

Unlikely Science (0)

bioconductor: PathNet

An R package for pathway analysis using topological information
Papers that mentioned: 13

Very Likely Science (100)

bioconductor: singscore

Rank-based single-sample gene set scoring method
Papers that mentioned: 13

Very Likely Science (100)

cran: SpatialPack

Tools for Assessment the Association Between Two Spatial Processes
Papers that mentioned: 13

Very Likely Science (75)

pypi: shap

A unified approach to explain the output of any machine learning model.
Papers that mentioned: 13

Very Likely Science (100)

cran: kml

K-Means for Longitudinal Data
Papers that mentioned: 13

Very Likely Science (75)

bioconductor: Mergeomics

Integrative network analysis of omics data
Papers that mentioned: 13

Very Likely Science (85)

pypi: web2py

full-stack framework for rapid development and prototyping of secure database-driven web-based applications, written and programmable in Python.
Papers that mentioned: 13

Very Likely Science (65)

cran: BSL

Bayesian Synthetic Likelihood
Papers that mentioned: 13

Very Likely Science (93)

cran: apaTables

Create American Psychological Association (APA) Style Tables
Papers that mentioned: 13

Very Likely Science (99)

cran: eggCounts

Hierarchical Modelling of Faecal Egg Counts
Papers that mentioned: 13

Very Likely Science (85)

cran: MAPA

Multiple Aggregation Prediction Algorithm
Papers that mentioned: 13

Very Likely Science (85)

pypi: Orange3

Orange, a component-based data mining framework.
Papers that mentioned: 13

Very Likely Science (100)

cran: NetworkComparisonTest

Statistical Comparison of Two Networks Based on Several Invariance Measures
Papers that mentioned: 13

Very Likely Science (85)

pypi: rb

rb, the redis blaster
Papers that mentioned: 13

Very Likely Science (65)

cran: PDE

Extract Tables and Sentences from PDFs with User Interface
Papers that mentioned: 13

Very Likely Science (75)

cran: MRS

Multi-Resolution Scanning for Cross-Sample Differences
Papers that mentioned: 13

Very Likely Science (83)

cran: Perc

Using Percolation and Conductance to Find Information Flow Certainty in a Direct Network
Papers that mentioned: 13

Very Likely Science (93)

pypi: metaMS

Data processing, and annotation for metabolomics analysis by low-resolution GC-MS
Papers that mentioned: 13

Very Likely Science (75)

pypi: casava

casava: a csv reader thingy
Papers that mentioned: 13

Very Likely Science (65)

pypi: clust

Optimised consensus clustering of multiple heterogeneous datasets
Papers that mentioned: 13

Very Likely Science (100)

pypi: CDR

这是第一个对外发布的模块
Papers that mentioned: 13

Very Likely Science (65)

pypi: mimics

Small tool for deferring actions and operations on objects and classes
Papers that mentioned: 13

Very Likely Science (65)

pypi: DecisionTree

A Python module for decision-tree based classification of multidimensional data
Papers that mentioned: 13

Likely Science (55)

pypi: c3d

A library for manipulating C3D binary files
Papers that mentioned: 13

Very Likely Science (100)

pypi: FINE

Framework for integrated energy systems assessment
Papers that mentioned: 13

Very Likely Science (80)

pypi: changepoint

A Bayesian change point library
Papers that mentioned: 13

Very Likely Science (100)

cran: MCSim

Determine the Optimal Number of Clusters
Papers that mentioned: 13

Very Likely Science (83)

cran: IntCal

Radiocarbon Calibration Curves
Papers that mentioned: 13

Very Likely Science (83)

bioconductor: copynumber

Segmentation of single- and multi-track copy number data by penalized least squares regression.
Papers that mentioned: 13

Very Likely Science (100)

pypi: assay

Future testing framework
Papers that mentioned: 13

Very Likely Science (80)

cran: ClassDiscovery

Classes and Methods for "Class Discovery" with Microarrays or Proteomics
Papers that mentioned: 13

Very Likely Science (85)

cran: ada

The R Package Ada for Stochastic Boosting
Papers that mentioned: 13

Very Likely Science (83)

pypi: OMM

Object Model Mapper for Python-based web apps and/or APIs
Papers that mentioned: 13

Very Likely Science (65)

pypi: pdf

Python library for parsing PDFs
Papers that mentioned: 13

Very Likely Science (65)

pypi: analytics

Library for efficiently adding analytics to your project.
Papers that mentioned: 13

Very Likely Science (60)

pypi: Starbucks

Unoffical Starbucks API.
Papers that mentioned: 13

Very Likely Science (65)

pypi: omics

omics: A Python package for omics data analysis.
Papers that mentioned: 13

Very Likely Science (75)

pypi: rast

Rast
Papers that mentioned: 13

Very Likely Science (65)

cran: BPM

Bayesian Purity Model to Estimate Tumor Purity
Papers that mentioned: 13

Very Likely Science (93)

bioconductor: iSEE

Interactive SummarizedExperiment Explorer
Papers that mentioned: 13

Very Likely Science (100)

bioconductor: affycomp

Graphics Toolbox for Assessment of Affymetrix Expression Measures
Papers that mentioned: 13

Very Likely Science (100)

cran: babel

Ribosome Profiling Data Analysis
Papers that mentioned: 13

Very Likely Science (93)

cran: MVR

Mean-Variance Regularization
Papers that mentioned: 13

Very Likely Science (99)

cran: csSAM

Papers that mentioned: 13

Unlikely Science (0)

cran: AGD

Analysis of Growth Data
Papers that mentioned: 13

Very Likely Science (87)

cran: PopGenKit

Papers that mentioned: 13

Unlikely Science (0)

bioconductor: metaMS

MS-based metabolomics annotation pipeline
Papers that mentioned: 13

Very Likely Science (75)

cran: clusterRepro

Reproducibility of Gene Expression Clusters
Papers that mentioned: 13

Very Likely Science (93)

bioconductor: Chicago

CHiCAGO: Capture Hi-C Analysis of Genomic Organization
Papers that mentioned: 13

Very Likely Science (100)

cran: pRF

Permutation Significance for Random Forests
Papers that mentioned: 13

Very Likely Science (83)

pypi: graphmap

Images on a quad graph. Create an infinite canvas
Papers that mentioned: 13

Very Likely Science (65)

cran: smacof

Multidimensional Scaling
Papers that mentioned: 13

Very Likely Science (83)

pypi: DBN

Decentralized Bluetooth Network
Papers that mentioned: 13

Very Likely Science (75)

pypi: Hawk

Easy setup tool for Rackspace Cloud Monitoring
Papers that mentioned: 13

Very Likely Science (65)

bioconductor: motifbreakR

A Package For Predicting The Disruptiveness Of Single Nucleotide Polymorphisms On Transcription Factor Binding Sites
Papers that mentioned: 13

Very Likely Science (100)

pypi: cron

cron
Papers that mentioned: 13

Very Likely Science (65)

pypi: drawtree

Draw binary tree in plain text
Papers that mentioned: 13

Very Likely Science (100)

cran: FSM

Finite Selection Model
Papers that mentioned: 13

Very Likely Science (83)

cran: EValue

Sensitivity Analyses for Unmeasured Confounding and Other Biases in Observational Studies and Meta-Analyses
Papers that mentioned: 13

Very Likely Science (83)

pypi: ipad

A silly util package
Papers that mentioned: 13

Very Likely Science (65)

bioconductor: GARS

GARS: Genetic Algorithm for the identification of Robust Subsets of variables in high-dimensional and challenging datasets
Papers that mentioned: 13

Very Likely Science (85)

cran: sjmisc

Data and Variable Transformation Functions
Papers that mentioned: 13

Very Likely Science (100)

cran: MAVE

Methods for Dimension Reduction
Papers that mentioned: 13

Very Likely Science (83)

bioconductor: ggcyto

Visualize Cytometry data with ggplot
Papers that mentioned: 13

Very Likely Science (100)

cran: omics

'–omics' Data Analysis Toolbox
Papers that mentioned: 13

Very Likely Science (85)