Ecosyste.ms: Papers

An open API service providing mapping between scientific papers and software projects that are mentioned in them.
All mentions data is based on the CZI Software Mentions dataset.

Projects: pypi: clust

https://packages.ecosyste.ms/registries/pypi.org/packages/clust

Optimised consensus clustering of multiple heterogeneous datasets
65 versions
Latest release: about 2 years ago
65 downloads last month

Papers Mentioning clust 13

10.1186/1751-0473-5-3

MADAM - An open source meta-analysis toolbox for R and Bioconductor
Cited by: 20
Author(s): Karl G. Kugler, Laurin A. J. Mueller, Armin Graber
Software Mentions: 10
Published: over 14 years ago

Genotyping‐by‐sequencing and ecological niche modeling illuminate phylogeography, admixture, and Pleistocene range dynamics in quaking aspen (<i>Populus tremuloides</i>)
Cited by: 12
Author(s): Justin C. Bagley, Neander Marcel Heming, Eliécer E. Gutiérrez, Upendra Kumar Devisetty, Karen E. Mock, Andrew J. Eckert, Steven H. Strauss
Software Mentions: 9
Published: over 4 years ago

10.1038/s42003-020-01377-3

Genomic and transcriptomic variation defines the chromosome-scale assembly of Haemonchus contortus, a model gastrointestinal worm
Cited by: 71
Author(s): Stephen R. Doyle, Alan S. Tracey, Roz Laing, Nancy Holroyd, David J. Bartley, Wojtek Bazant, Helen Beasley, Robin N. Beech, Collette Britton, Karen Brooks, Umer Chaudhry, Kirsty Maitland, Axel Martinelli, Jennifer D. Noonan, Michael Paulini, Michael A. Quail, Elizabeth Redman, Faye H. Rodgers, Guillaume Sallé, Muhammad Zubair Shabbir, Geetha Sankaranarayanan, Janneke Wit, Kevin Howe, Neil Sargison, Eileen Devaney, Matthew Berriman, John S. Gilleard, James A. Cotton
Software Mentions: 8
Published: about 4 years ago

10.1186/s12885-021-07928-z

Integrated bioinformatic analysis identifies UBE2Q1 as a potential prognostic marker for high grade serous ovarian cancer
Cited by: 8
Author(s): Rachel Topno, I.K. Singh, Manoj Kumar, Pallavi Agarwal
Software Mentions: 5
Published: over 3 years ago

10.1186/s13059-018-1536-8

Clust: automatic extraction of optimal co-expressed gene clusters from gene expression data
Cited by: 111
Author(s): Basel Abu‐Jamous, Steven Kelly
Software Mentions: 5
Published: about 6 years ago

10.1074/mcp.RA120.002275

On the Robustness of Graph-Based Clustering to Random Network Alterations
Cited by: 7
Author(s): R. Greg Stacey, Michael A. Skinnider, Leonard J. Foster
Software Mentions: 4
Published: almost 4 years ago

10.3389/fpls.2017.01314

Root Transcriptomic Analysis Revealing the Importance of Energy Metabolism to the Development of Deep Roots in Rice (Oryza sativa L.)
Cited by: 26
Author(s): Qiaojun Lou, Liang Chen, Hanwei Mei, Kai Xu, Haibin Wei, Fang Fěng, Tiemei Li, Xiaomeng Pang, Caiping Shi, Lijun Luo, Yang Zhong
Software Mentions: 3
Published: over 7 years ago

10.1186/s13068-021-01964-4

Identification and characterization of proteins of unknown function (PUFs) in Clostridium thermocellum DSM 1313 strains as potential genetic engineering targets
Cited by: 2
Author(s): Suresh Poudel, Alexander L Cope, Kaela B. O’Dell, Adam M. Guss, Hyung-Min Seo, Cong T. Trinh, Robert L. Hettich
Software Mentions: 2
Published: over 3 years ago

10.3390/vetsci8050081

Comparison of the Gut Microbiota of Jeju and Thoroughbred Horses in Korea
Cited by: 3
Author(s): Taemook Park, Jungho Yoon, Ah-Ram Kim, Tatsuya Unno, Young‐Min Yun
Software Mentions: 2
Published: over 3 years ago

10.1534/g3.119.400430

Combining Transcriptomics and Proteomics Reveals Potential Post-transcriptional Control of Gene Expression After Light Exposure in <i>Metarhizium acridum</i>
Cited by: 14
Author(s): Guilherme Thomaz Pereira Brancini, Márcia E. S. Ferreira, Drauzio E.N. Rangel, Gilberto Úbida Leite Braga
Software Mentions: 2
Published: about 5 years ago

10.1242/bio.037325

The continuing evolution of publishing in the biological sciences
Cited by: 11
Author(s): Steven Kelly
Software Mentions: 2
Published: over 6 years ago

10.1371/journal.pone.0114238

De novo Sequencing, Assembly and Characterization of Antennal Transcriptome of Anomala corpulenta Motschulsky (Coleoptera: Rutelidae)
Cited by: 21
Author(s): Haoliang Chen, Lulu Lin, Minghui Xie, Guangling Zhang, Weihua Su
Software Mentions: 2
Published: almost 10 years ago

10.3390/biom10030461

BioShell 3.0: Library for Processing Structural Biology Data
Cited by: 7
Author(s): Joanna M. Macnar, Natalia A Szulc, Justyna Krys, Aleksandra E. Badaczewska-Dawid, Dominik Gront
Software Mentions: 1
Published: over 4 years ago