Projects: pypi: clust
https://packages.ecosyste.ms/registries/pypi.org/packages/clust
Optimised consensus clustering of multiple heterogeneous datasets
65 versions
Latest release: over 3 years ago
65 downloads last month
Enhanced Analysis
Educational Contributors:
basel.abujamous@plants.ox.ac.uk
steven.kelly@plants.ox.ac.uk
Repository Activity:
Repository Owner:
Basel Abu Jamous (user)
Bioinformatician & Data Scientist Academic
Bioinformatician & Data Scientist Academic
README Analysis:
DOI Found
Science Score: 100/100
Starting Score: 100 points
Bonuses:
-
+40
Educational commit emails
2 contributors with educational email addresses -
+20
Academic repository owner
Repository owned by academic institution -
+14
Science terms in README
7 scientific terms found in README -
+10
DOI references
1 DOI references found in README
Penalties:
-
-10
PyPI ecosystem
General-purpose ecosystem -
-10
No science terms in description
No scientific terms found in description
Very Likely Science (100)
Papers Mentioning clust 13
10.1186/1751-0473-5-3
MADAM - An open source meta-analysis toolbox for R and BioconductorCited by: 20
Author(s): Karl G. Kugler, Laurin A. J. Mueller, Armin Graber
Software Mentions: 10
Published: about 16 years ago
10.1002/ece3.6214
Genotyping‐by‐sequencing and ecological niche modeling illuminate phylogeography, admixture, and Pleistocene range dynamics in quaking aspen (<i>Populus tremuloides</i>)Cited by: 12
Author(s): Justin C. Bagley, Neander Marcel Heming, Eliécer E. Gutiérrez, Upendra Kumar Devisetty, Karen E. Mock, Andrew J. Eckert, Steven H. Strauss
Software Mentions: 9
Published: almost 6 years ago
10.1038/s42003-020-01377-3
Genomic and transcriptomic variation defines the chromosome-scale assembly of Haemonchus contortus, a model gastrointestinal wormCited by: 71
Author(s): Stephen R. Doyle, Alan S. Tracey, Roz Laing, Nancy Holroyd, David J. Bartley, Wojtek Bazant, Helen Beasley, Robin N. Beech, Collette Britton, Karen Brooks, Umer Chaudhry, Kirsty Maitland, Axel Martinelli, Jennifer D. Noonan, Michael Paulini, Michael A. Quail, Elizabeth Redman, Faye H. Rodgers, Guillaume Sallé, Muhammad Zubair Shabbir, Geetha Sankaranarayanan, Janneke Wit, Kevin Howe, Neil Sargison, Eileen Devaney, Matthew Berriman, John S. Gilleard, James A. Cotton
Software Mentions: 8
Published: over 5 years ago
10.1186/s12885-021-07928-z
Integrated bioinformatic analysis identifies UBE2Q1 as a potential prognostic marker for high grade serous ovarian cancerCited by: 8
Author(s): Rachel Topno, I.K. Singh, Manoj Kumar, Pallavi Agarwal
Software Mentions: 5
Published: about 5 years ago
10.1186/s13059-018-1536-8
Clust: automatic extraction of optimal co-expressed gene clusters from gene expression dataCited by: 111
Author(s): Basel Abu‐Jamous, Steven Kelly
Software Mentions: 5
Published: over 7 years ago
10.1074/mcp.RA120.002275
On the Robustness of Graph-Based Clustering to Random Network AlterationsCited by: 7
Author(s): R. Greg Stacey, Michael A. Skinnider, Leonard J. Foster
Software Mentions: 4
Published: about 5 years ago
10.3389/fpls.2017.01314
Root Transcriptomic Analysis Revealing the Importance of Energy Metabolism to the Development of Deep Roots in Rice (Oryza sativa L.)Cited by: 26
Author(s): Qiaojun Lou, Liang Chen, Hanwei Mei, Kai Xu, Haibin Wei, Fang Fěng, Tiemei Li, Xiaomeng Pang, Caiping Shi, Lijun Luo, Yang Zhong
Software Mentions: 3
Published: over 8 years ago
10.1186/s13068-021-01964-4
Identification and characterization of proteins of unknown function (PUFs) in Clostridium thermocellum DSM 1313 strains as potential genetic engineering targetsCited by: 2
Author(s): Suresh Poudel, Alexander L Cope, Kaela B. O’Dell, Adam M. Guss, Hyung-Min Seo, Cong T. Trinh, Robert L. Hettich
Software Mentions: 2
Published: almost 5 years ago
10.3390/vetsci8050081
Comparison of the Gut Microbiota of Jeju and Thoroughbred Horses in KoreaCited by: 3
Author(s): Taemook Park, Jungho Yoon, Ah-Ram Kim, Tatsuya Unno, Young‐Min Yun
Software Mentions: 2
Published: almost 5 years ago
10.1534/g3.119.400430
Combining Transcriptomics and Proteomics Reveals Potential Post-transcriptional Control of Gene Expression After Light Exposure in <i>Metarhizium acridum</i>Cited by: 14
Author(s): Guilherme Thomaz Pereira Brancini, Márcia E. S. Ferreira, Drauzio E.N. Rangel, Gilberto Úbida Leite Braga
Software Mentions: 2
Published: over 6 years ago
10.1242/bio.037325
The continuing evolution of publishing in the biological sciencesCited by: 11
Author(s): Steven Kelly
Software Mentions: 2
Published: over 7 years ago
10.1371/journal.pone.0114238
De novo Sequencing, Assembly and Characterization of Antennal Transcriptome of Anomala corpulenta Motschulsky (Coleoptera: Rutelidae)Cited by: 21
Author(s): Haoliang Chen, Lulu Lin, Minghui Xie, Guangling Zhang, Weihua Su
Software Mentions: 2
Published: over 11 years ago
10.3390/biom10030461
BioShell 3.0: Library for Processing Structural Biology DataCited by: 7
Author(s): Joanna M. Macnar, Natalia A Szulc, Justyna Krys, Aleksandra E. Badaczewska-Dawid, Dominik Gront
Software Mentions: 1
Published: almost 6 years ago