Ecosyste.ms: Papers

An open API service providing mapping between scientific papers and software projects that are mentioned in them.
All mentions data is based on the CZI Software Mentions dataset.

Papers: 10.1038/s42003-020-01377-3

https://doi.org/10.1038/s42003-020-01377-3

Genomic and transcriptomic variation defines the chromosome-scale assembly of Haemonchus contortus, a model gastrointestinal worm

Cited by: 71
Author(s): Stephen R. Doyle, Alan S. Tracey, Roz Laing, Nancy Holroyd, David J. Bartley, Wojtek Bazant, Helen Beasley, Robin N. Beech, Collette Britton, Karen Brooks, Umer Chaudhry, Kirsty Maitland, Axel Martinelli, Jennifer D. Noonan, Michael Paulini, Michael A. Quail, Elizabeth Redman, Faye H. Rodgers, Guillaume Sallé, Muhammad Zubair Shabbir, Geetha Sankaranarayanan, Janneke Wit, Kevin Howe, Neil Sargison, Eileen Devaney, Matthew Berriman, John S. Gilleard, James A. Cotton
Published: about 4 years ago

Software Mentions 8

cran: poppr
Genetic Analysis of Populations with Mixed Reproduction
Papers that mentioned: 251
cran: STAR
Spike Train Analysis with R
Papers that mentioned: 5,759
pypi: bwa
Bwa: Simple Notification Sender(Discord, Slack, Gmail and Telegram)
Papers that mentioned: 989
pypi: clust
Optimised consensus clustering of multiple heterogeneous datasets
Papers that mentioned: 13
pypi: cutadapt
Adapter trimming and other preprocessing of high-throughput sequencing reads
Papers that mentioned: 1,562
pypi: gmap
A package that prints 'Hello, World!'
Papers that mentioned: 64
pypi: kallisto
The Kallisto software enables the efficient calculation of atomic features that can be used within a quantitative structure-activity relationship (QSAR) approach. Furthermore, several modelling helpers are implemented.
Papers that mentioned: 307
pypi: run
Python Process Run Control
Papers that mentioned: 35