Ecosyste.ms: Papers
An open API service providing mapping between scientific papers and software projects that are mentioned in them.
All mentions data is based on the CZI Software Mentions dataset.
Projects: pypi: gmap
https://packages.ecosyste.ms/registries/pypi.org/packages/gmap
A package that prints 'Hello, World!'
19 versions
Latest release: over 1 year ago
1 dependent package
99 downloads last month
Papers Mentioning gmap 64
10.12688/wellcomeopenres.16430.2
Polysomal mRNA Association and Gene Expression in Trypanosoma bruceiCited by: 0
Author(s): Michele Tinti, Anna Kelner-Mirôn, Lizzie J. Marriott, Michael A. J. Ferguson
Software Mentions: 11
Published: over 3 years ago
10.1038/s42003-018-0199-z
Improved reference genome for the domestic horse increases assembly contiguity and compositionCited by: 137
Author(s): Theodore S. Kalbfleisch, Edward S. Rice, Michael S. DePriest, Brian P. Walenz, Matthew S. Hestand, Joris Vermeesch, Brendan O’Connell, Ian T. Fiddes, Alisa O. Vershinina, Nedda F. Saremi, Jessica L. Petersen, Carrie J. Finno, Rebecca R. Bellone, Molly E. McCue, Samantha A. Brooks, Ernest Bailey, Ludovic Orlando, Edward Green, Donald C. Miller, Douglas F. Antczak, James N. MacLeod
Software Mentions: 9
Published: about 6 years ago
10.3389/fpls.2020.01269
Analysis of Metabolites and Gene Expression Changes Relative to Apricot (Prunus armeniaca L.) Fruit Quality During Development and RipeningCited by: 27
Author(s): Beatriz Ester García-Gómez, David Ruiz, J. Salazar, M. Rubio, Pedro J. Martínez-García, Pedro Martínez‐Gómez
Software Mentions: 9
Published: over 4 years ago
10.1186/s13059-020-02165-2
iMOKA: k-mer based software to analyze large collections of sequencing dataCited by: 6
Author(s): Claudio Lorenzi, Sylvain Barriere, Jean-Philippe Villemin, Laureline Dejardin Bretones, Alban Mancheron, William Ritchie
Software Mentions: 9
Published: about 4 years ago
10.1038/s42003-020-01377-3
Genomic and transcriptomic variation defines the chromosome-scale assembly of Haemonchus contortus, a model gastrointestinal wormCited by: 71
Author(s): Stephen R. Doyle, Alan S. Tracey, Roz Laing, Nancy Holroyd, David J. Bartley, Wojtek Bazant, Helen Beasley, Robin N. Beech, Collette Britton, Karen Brooks, Umer Chaudhry, Kirsty Maitland, Axel Martinelli, Jennifer D. Noonan, Michael Paulini, Michael A. Quail, Elizabeth Redman, Faye H. Rodgers, Guillaume Sallé, Muhammad Zubair Shabbir, Geetha Sankaranarayanan, Janneke Wit, Kevin Howe, Neil Sargison, Eileen Devaney, Matthew Berriman, John S. Gilleard, James A. Cotton
Software Mentions: 8
Published: about 4 years ago
10.1186/1471-2164-15-786
A transcriptome resource for the koala (Phascolarctos cinereus): insights into koala retrovirus transcription and sequence diversityCited by: 47
Author(s): Matthew Hobbs, Ana Pavasovic, Andrew King, Peter J. Prentis, Mark D. B. Eldridge, Zhiliang Chen, Donald J. Colgan, Adam Polkinghorne, Marc R. Wilkins, Cheyne Flanagan, Amber Gillett, Jon Hanger, Rebecca N. Johnson, Peter Timms
Software Mentions: 8
Published: about 10 years ago
10.3389/fpls.2016.01446
A Developmental Transcriptome Map for Allotetraploid Arachis hypogaeaCited by: 149
Author(s): Josh Clevenger, Ye Chu, Brian E. Scheffler, Peggy Ozias‐Akins
Software Mentions: 7
Published: about 8 years ago
10.1038/s41598-019-38532-8
Taraxacum kok-saghyz (rubber dandelion) genomic microsatellite loci reveal modest genetic diversity and cross-amplify broadly to related speciesCited by: 13
Author(s): Marcin Nowicki, Yichen Zhao, Sarah L. Boggess, Helge Fluess, Miriam Payá‐Milans, Margaret Staton, Logan C. Houston, Ðenita Hadziabdic, Robert N. Trigiano
Software Mentions: 7
Published: almost 6 years ago
10.1038/sdata.2017.149
Building a locally diploid genome and transcriptome of the diatom Fragilariopsis cylindrusCited by: 12
Author(s): Pirita Paajanen, Jan Strauss, Cock van Oosterhout, Mark McMullan, Matt Clark, Thomas Möck
Software Mentions: 7
Published: about 7 years ago
10.1186/s13015-016-0068-6
Bitpacking techniques for indexing genomes: II. Enhanced suffix arraysCited by: 2
Author(s): Thomas D. Wu
Software Mentions: 6
Published: over 8 years ago
10.1186/s12859-016-1204-5
LMAP: Lightweight Multigene Analyses in PAMLCited by: 12
Author(s): Emanuel Maldonado, Daniela Almeida, Tibisay Escalona, Imran Khan, Vı́tor Vasconcelos, Agostinho Antunes
Software Mentions: 6
Published: about 8 years ago
10.1002/ece3.5690
Genetic divergence and phenotypic plasticity contribute to variation in cuticular hydrocarbons in the seaweed fly <i>Coelopa frigida</i>Cited by: 9
Author(s): Emma L. Berdan, Swantje Enge, Göran M. Nylund, Maren Wellenreuther, Gerrit A. Martens, Henrik Pavia
Software Mentions: 6
Published: about 5 years ago
10.1534/g3.120.401050
The <i>Gossypium longicalyx</i> Genome as a Resource for Cotton Breeding and EvolutionCited by: 29
Author(s): Corrinne E. Grover, Mengqiao Pan, Daojun Yuan, Mark A. Arick, Guanjing Hu, Logan Brase, David M. Stelly, Zefu Lu, Robert J. Schmitz, Daniel G. Peterson, Jonathan F. Wendel, Joshua A. Udall
Software Mentions: 6
Published: over 4 years ago
10.1111/age.12962
Using online tools at the Bovine Genome Database to manually annotate genes in the new reference genomeCited by: 2
Author(s): Deborah A. Triant, J. J. Le Tourneau, Colin Diesh, Deepak Unni, Md. Shamimuzzaman, Amy T. Walsh, Jack M. Gardiner, Anna K Goldkamp, Yahan Li, Hung N. Nguyen, Courtney Roberts, Zhichao Zhao, L. J. Alexander, Jared E. Decker, Robert D. Schnabel, Steven G. Schroeder, Tad S. Sonstegard, Jeremy F. Taylor, Rocío Melissa Rivera, Darren E. Hagen, Christine G. Elsik
Software Mentions: 6
Published: over 4 years ago
10.1093/gigascience/giy132
Comprehensive evaluation of RNA-seq analysis pipelines in diploid and polyploid speciesCited by: 21
Author(s): Miriam Payá‐Milans, James W. Olmstead, Gerardo H. Nunez, Timothy A. Rinehart, Margaret Staton
Software Mentions: 5
Published: about 6 years ago
10.1038/s41598-017-15629-6
Innate Cell-Mediated Cytotoxic Activity of European Sea Bass Leucocytes Against Nodavirus-Infected Cells: A Functional and RNA-seq StudyCited by: 30
Author(s): Elena Chaves-Pozo, Yulema Valero, Anna Esteve‐Codina, Jèssica Gómez-Garrido, Marc Dabad, Tyler Alioto, José Meseguer, M. Ángeles Esteban, Alberto Cuesta
Software Mentions: 5
Published: about 7 years ago
10.1371/journal.pone.0085568
Construction of a Public CHO Cell Line Transcript Database Using Versatile Bioinformatics Analysis PipelinesCited by: 58
Author(s): Oliver Rupp, J. Ole Becker, Karina Brinkrolf, Christina Timmermann, Nicole Borth, Alfred Pühler, Thomas Noll, Alexander Goesmann
Software Mentions: 5
Published: almost 11 years ago
10.1111/pbi.13115
Genome‐wide selection footprints and deleterious variations in young Asian allotetraploid rapeseedCited by: 48
Author(s): Jun Zou, Limin Mao, Jie Qiu, Meng Wang, Jia Lu, Dongya Wu, Zhesi He, Meihong Chen, Yifei Shen, Enhui Shen, Yongji Huang, Ruiyuan Li, Dandan Hu, Lei Shi, Kai Wang, Qian Zhu, Chu-Yu Ye, Ian Bancroft, Graham J. King, Jinling Meng
Software Mentions: 5
Published: over 5 years ago
10.1186/s12864-019-5838-3
Genome-wide profiling of the alternative splicing provides insights into development in Plutella xylostellaCited by: 6
Author(s): Qian Zhao, Weimin Zhong, Weiyi He, Yiying Li, Yaqing Li, Tianpu Li, Liette Vasseur, Minsheng You
Software Mentions: 5
Published: over 5 years ago
10.1186/s12864-018-5357-7
A pan-transcriptome analysis shows that disease resistance genes have undergone more selection pressure during barley domesticationCited by: 24
Author(s): Yanling Ma, Miao Liu, Jiri Stiller, Chunji Liu
Software Mentions: 4
Published: almost 6 years ago
10.1186/s13015-016-0069-5
Bitpacking techniques for indexing genomes: I. Hash tablesCited by: 2
Author(s): Thomas D. Wu
Software Mentions: 4
Published: over 8 years ago
10.1186/1471-2105-14-S7-S10
NGS-Trex: Next Generation Sequencing Transcriptome profile explorerCited by: 13
Author(s): Ilenia Boria, Lara Boatti, Graziano Pesole, Flavio Mignone
Software Mentions: 4
Published: over 11 years ago
10.1186/s12864-019-5444-4
The plastid and mitochondrial genomes of Eucalyptus grandisCited by: 31
Author(s): Desré Pinard, Alexander Andrew Myburg, Eshchar Mizrachi
Software Mentions: 4
Published: almost 6 years ago
10.1186/s12870-019-1968-7
Reconstruction of the full-length transcriptome atlas using PacBio Iso-Seq provides insight into the alternative splicing in Gossypium australeCited by: 40
Author(s): Shouli Feng, Min Xu, Fujie Liu, Changjiang Cui, Baoliang Zhou
Software Mentions: 4
Published: over 5 years ago
10.1111/mec.14781
Pleiotropic effects of regulatory variation in<i>tan</i>result in correlation of two pigmentation traits in<i>Drosophila melanogaster</i>Cited by: 14
Author(s): Lukas Endler, Jean‐Michel Gibert, Viola Nolte, Christian Schlötterer
Software Mentions: 4
Published: over 6 years ago
10.1371/journal.pgen.1009745
The Easter Egg Weevil (Pachyrhynchus) genome reveals syntenic patterns in Coleoptera across 200 million years of evolutionCited by: 9
Author(s): Matthew H. Van Dam, Analyn Cabras, James Henderson, Andrew J. Rominger, Cynthia Pérez Estrada, Arina D. Omer, Olga Dudchenko, E Aiden, Athena Lam
Software Mentions: 4
Published: over 3 years ago
10.1371/journal.pone.0118231
Sugarcane Giant Borer Transcriptome Analysis and Identification of Genes Related to DigestionCited by: 12
Author(s): Fernando Campos de Assis Fonseca, Alexandre Augusto Pereira Firmino, Leonardo Lima Pepino Macedo, Roberta Ramos Coelho, José Dijair Antonino de Sousa Júnior, Orzenil B. Silva‐Junior, Roberto Coiti Togawa, George J. Pappas, Luiz Avelar Brandão de Góis, Maria Cristina Mattar da Silva, Maria Fátima Grossi-de-Sá
Software Mentions: 4
Published: almost 10 years ago
10.15252/embr.201744059
Transposon‐driven transcription is a conserved feature of vertebrate spermatogenesis and transcript evolutionCited by: 33
Author(s): Matthew P Davis, Claudia Carrieri, Harpreet K. Saini, Stijn van Dongen, Tommaso Leonardi, Giovanni Bussotti, Jack Monahan, Tania Auchynnikava, Angelo Bitetti, Juri Rappsilber, Robin C. Allshire, Alena Shkumatava, Dónal O’Carroll, Anton J. Enright
Software Mentions: 4
Published: over 7 years ago
10.3389/fpls.2019.01301
Differential Expression of Candidate Salivary Effector Genes in Pea Aphid Biotypes With Distinct Host Plant SpecificityCited by: 25
Author(s): Hélène Boulain, Fabrice Legeai, Julie Jaquiéry, Endrick Guy, Stéphanie Morlière, Jean‐Christophe Simon, Akiko Sugio
Software Mentions: 3
Published: about 5 years ago
10.1186/1471-2164-14-49
Genome reannotation of the lizard Anolis carolinensis based on 14 adult and embryonic deep transcriptomesCited by: 54
Author(s): Walter L. Eckalbar, Elizabeth Hutchins, Glenn J. Markov, April N. Allen, Jason J. Corneveaux, Kerstin Lindblad‐Toh, Federica Di Palma, Jessica Alföldi, Matthew J. Huentelman, Kenro Kusumi
Software Mentions: 3
Published: almost 12 years ago
10.1038/srep34908
Genomics-assisted characterization of a breeding collection of Apios americana, an edible tuberous legumeCited by: 19
Author(s): Vikas Belamkar, Andrew Farmer, Nathan T. Weeks, Scott R. Kalberer, W. J. Blackmon, Steven B. Cannon
Software Mentions: 3
Published: about 8 years ago
10.1186/s12870-021-02867-0
Transcriptome analysis reveals major transcriptional changes during regrowth after mowing of red clover (Trifolium pratense)Cited by: 7
Author(s): Denise Herbert, Thomas P. Gross, Oliver Rupp, Annette Becker
Software Mentions: 3
Published: almost 4 years ago
10.1186/s13059-015-0757-3
Exploring the rice dispensable genome using a metagenome-like assembly strategyCited by: 78
Author(s): Wen Yao, Guangwei Li, Hu Zhao, Gongwei Wang, Xingming Lian, Weibo Xie
Software Mentions: 3
Published: about 9 years ago
10.1534/g3.120.401285
Genomics of Clinal Local Adaptation in<i>Pinus sylvestris</i>Under Continuous Environmental and Spatial Genetic SettingCited by: 23
Author(s): Jaakko Tyrmi, Jaana Vuosku, Juan J. Acosta, Zhen Li, Lieven Sterck, Marı́a Teresa Cervera, Outi Savolainen, Tanja Pyhäjärvi
Software Mentions: 3
Published: over 4 years ago
10.1186/s13059-015-0729-7
Exploiting single-molecule transcript sequencing for eukaryotic gene predictionCited by: 115
Author(s): André E. Minoche, Juliane C. Dohm, Jessica Schneider, Daniela Holtgräwe, Prisca Viehöver, Magda Montfort, Thomas Rosleff Sörensen, Bernd Weißhaar, Heinz Himmelbauer
Software Mentions: 3
Published: over 9 years ago
10.1186/s12864-015-1588-z
Deep developmental transcriptome sequencing uncovers numerous new genes and enhances gene annotation in the sponge Amphimedon queenslandicaCited by: 87
Author(s): Selene L. Fernández-Valverde, Andrew Calcino, Bernard M. Degnan
Software Mentions: 3
Published: over 9 years ago
10.1371/journal.pone.0227011
A systems biology approach uncovers a gene co-expression network associated with cell wall degradability in maizeCited by: 2
Author(s): Clément Cuello, Aurélie Baldy, Véronique Brunaud, Johann Joets, Étienne Delannoy, Marie‐Pierre Jacquemot, Lucy Botran, Yves Griveau, Cécile Guichard, Ludivine Soubigou‐Taconnat, Marie‐Laure Martin‐Magniette, Philippe Leroy, Valérie Méchin, Matthieu Reymond, Sylvie Coursol
Software Mentions: 2
Published: almost 5 years ago
10.3390/plants8070237
Molecular Characterisation of a Supergene Conditioning Super-High Vitamin C in Kiwifruit HybridsCited by: 6
Author(s): John McCallum, William A. Laing, Sean Bulley, Susan Thomson, Andrew Catanach, Martin Shaw, Mareike Knaëbel, Jibran Tahir, Simon C. Deroles, Gail M. Timmerman-Vaughan, Ross N. Crowhurst, Elena Hilario, Matthew Chisnall, Robyn Lee, Richard C. Macknight, Alan Seal
Software Mentions: 2
Published: over 5 years ago
10.3390/ijms22189842
Organelle Genomes and Transcriptomes of Nymphaea Reveal the Interplay between Intron Splicing and RNA EditingCited by: 6
Author(s): Zheng-Shan He, Andan Zhu, Jun‐Bo Yang, Weishu Fan, Li D
Software Mentions: 2
Published: about 3 years ago
10.1093/pcp/pcw207
TOMATOMICS: A Web Database for Integrated Omics Information in TomatoCited by: 18
Author(s): Toru Kudo, Mariko Kobayashi, Shin Terashima, Minami Katayama, Soichi Ozaki, Maasa Kanno, Misa Saito, Koji Yokoyama, Hajime Ohyanagi, Koh Aoki, Yasutaka Kubo, Kentarô Yano
Software Mentions: 2
Published: almost 8 years ago
10.3389/fgene.2020.558394
The PacBio Full-Length Transcriptome of the Tea Aphid as a Reference ResourceCited by: 7
Author(s): Feng Hong, Si-Hua Mo, Xingyu Lin, Jinzhi Niu, Jian Yin, Dong Wei
Software Mentions: 2
Published: about 4 years ago
10.1093/pcp/pcu187
MOROKOSHI: Transcriptome Database in Sorghum bicolorCited by: 98
Author(s): Yuko Makita, Setsuko Shimada, Mika Kawashima, Tomoko Kondou-Kuriyama, Tetsuro Toyoda, Minami Matsui
Software Mentions: 2
Published: almost 10 years ago
10.1534/g3.118.200318
A High Quality Genome for <i>Mus spicilegus</i>, a Close Relative of House Mice with Unique Social and Ecological AdaptationsCited by: 7
Author(s): Matthew Brian Couger, Lena Arévalo, Polly Campbell
Software Mentions: 2
Published: over 6 years ago
10.1534/g3.120.401434
Single-Molecule Real-Time Transcript Sequencing of Turnips Unveiling the Complexity of the Turnip TranscriptomeCited by: 1
Author(s): Hongmei Zhuang, Qiang Wang, Hongwei Han, Huifang Liu, Hao Wang
Software Mentions: 2
Published: about 4 years ago
10.1186/s12864-020-07088-7
Proteotranscriptomics assisted gene annotation and spatial proteomics of Bombyx mori BmN4 cell lineCited by: 7
Author(s): Michael Levin, Marion Scheibe, Falk Butter
Software Mentions: 2
Published: about 4 years ago
10.1038/s41598-018-36748-8
Characterization of a male specific region containing a candidate sex determining gene in Atlantic codCited by: 21
Author(s): Tina Graceline Kirubakaran, Øivind Andersen, Maria Cristina De Rosa, Terese Andersstuen, Kristina Hallan, Matthew Kent, Sigbjørn Lien
Software Mentions: 2
Published: almost 6 years ago
10.1038/s41598-018-38442-1
Antimicrobial peptides from Rana [Lithobates] catesbeiana: Gene structure and bioinformatic identification of novel forms from tadpolesCited by: 15
Author(s): Caren C. Helbing, S. Austin Hammond, Shireen H. Jackman, Stanley Houston, René L. Warren, Caroline E. Cameron, İnanç Birol
Software Mentions: 2
Published: almost 6 years ago
10.1038/s41598-019-39878-9
Regional perturbation of gene transcription is associated with intrachromosomal rearrangements and gene fusion transcripts in high grade ovarian cancerCited by: 8
Author(s): Paul M. Krzyzanowski, Fabrice Sircoulomb, Fouad Yousif, Josée Normand, José La Rose, Kyle Francis, Fernando Suarez, Timothy Beck, John Douglas Mcpherson, Lincoln Stein, Robert Rottapel
Software Mentions: 2
Published: over 5 years ago
10.1155/2019/9702342
Distribution, Characteristics, and Regulatory Potential of Long Noncoding RNAs in Brown-Rot FungiCited by: 7
Author(s): Alessandra Borgognone, Walter Sanseverino, Riccardo Aiese Cigliano, Raúl Castanera
Software Mentions: 2
Published: over 5 years ago
10.1001/jamanetworkopen.2019.10490
Trends in Racial/Ethnic Representation Among US Medical StudentsCited by: 209
Author(s): Elle Lett, H. Moses Murdock, Whitney Orji, Jaya Aysola, Ronnie Sebro
Software Mentions: 1
Published: about 5 years ago
10.1007/s12020-015-0848-7
Multi-species sequence comparison reveals conservation of ghrelin gene-derived splice variants encoding a truncated ghrelin peptideCited by: 20
Author(s): Inge Seim, Penny L. Jeffery, Patrick B. Thomas, Carina Walpole, Michelle Maugham, Jenny N. Fung, Pei-Yi Yap, Angela O'Keeffe, John Lai, Eliza Whiteside, Adrian C. Herington, Lisa K. Chopin
Software Mentions: 1
Published: almost 9 years ago
10.1038/sdata.2018.266
Transcriptomic study of Herpes simplex virus type-1 using full-length sequencing techniquesCited by: 16
Author(s): Zsolt Boldogkői, Attila Szűcs, Zsolt Balázs, Donald Sharon, M Snyder, Dóra Tombácz
Software Mentions: 1
Published: about 6 years ago
10.1038/sdata.2018.276
Transcriptome-wide analysis of a baculovirus using nanopore sequencingCited by: 9
Author(s): Zsolt Boldogkői, Norbert Moldován, Attila Szűcs, Dóra Tombácz
Software Mentions: 1
Published: almost 6 years ago
10.1371/journal.pgen.1000046
Genomic Islands in the Pathogenic Filamentous Fungus Aspergillus fumigatusCited by: 452
Author(s): Natalie D. Fedorova, Nora Khaldi, Vinita Joardar, Rama Maiti, Paolo Amedeo, Michael J. Anderson, Jonathan Crabtree, Joana C. Silva, Jonathan H. Badger, Ahmed A. Albarraq, Samuel V. Angiuoli, Howard Bussey, Paul Bowyer, Peter J. Cotty, Paul S. Dyer, Amy Egan, Kevin Galens, Claire M. Fraser, Brian J. Haas, Jason M. Inman, Richard W. Kent, Sébastien Lemieux, Iran Malavazi, Joshua Orvis, Terry Roemer, Catherine M. Ronning, Jaideep P. Sundaram, Granger Sutton, Geoff Turner, J. Craig Venter, Owen White, Brett Whitty, Phil Youngman, Kenneth H. Wolfe, Gustavo H. Goldman, Jennifer Wortman, Bo Jiang, David W. Denning, William C. Nierman
Software Mentions: 1
Published: over 16 years ago
10.1186/s12862-020-01629-0
Analysis of structural variants in four African cichlids highlights an association with developmental and immune related genesCited by: 5
Author(s): Luca Penso-Dolfin, Angela L. Man, Tarang K. Mehta, Wilfried Haerty, Federica Di Palma
Software Mentions: 1
Published: over 4 years ago
10.1038/s41598-018-26672-2
Signatures of balancing selection in toll-like receptor (TLRs) genes – novel insights from a free-living rodentCited by: 35
Author(s): Agnieszka Kloch, Marius Wenzel, Dominik R. Laetsch, Olek Michalski, Anna Bajer, Jerzy M. Behnke, Renata Welc-Falęciak, Stuart B. Piertney
Software Mentions: 1
Published: over 6 years ago
10.1093/jhered/esab021
An Annotated Draft Genome for the Andean Bear, <i>Tremarctos ornatus</i>Cited by: 4
Author(s): Nedda F. Saremi, Jonas Oppenheimer, Christopher Vollmers, Brendan O’Connell, Shard A Milne, Ashley Byrne, Li Yu, Oliver A. Ryder, Edward Green, Beth Shapiro
Software Mentions: 1
Published: over 3 years ago
10.1371/journal.pone.0077022
Identification of Pyrus Single Nucleotide Polymorphisms (SNPs) and Evaluation for Genetic Mapping in European Pear and Interspecific Pyrus HybridsCited by: 61
Author(s): Sara Montanari, Munazza Saeed, Mareike Knäbel, YoonKyeong Kim, Michela Troggio, Mickaël Malnoy, Riccardo Velasco, Paolo Fontana, Kyungho Won, Charles‐Eric Durel, Laure Perchepied, Robert J. Schaffer, Claudia Wiedow, Vincent G. M. Bus, Lester Brewer, Susan E. Gardiner, Ross N. Crowhurst, David Chagné
Software Mentions: 1
Published: about 11 years ago
10.1534/g3.120.401423
A Nanopore Based Chromosome-Level Assembly Representing Atlantic Cod from the Celtic SeaCited by: 16
Author(s): Tina Graceline Kirubakaran, Øivind Andersen, Michel Moser, Mariann Árnyasi, Philip McGinnity, Sigbjørn Lien, Matthew Kent
Software Mentions: 1
Published: over 4 years ago
10.1534/g3.119.401010
A Genome Assembly of the Barley ‘Transformation Reference’ Cultivar Golden PromiseCited by: 46
Author(s): Miriam Schreiber, Martin Mascher, Jonathan Wright, Sudharsan Padmarasu, Axel Himmelbach, Darren Heavens, Linda Milne, Bernardo Clavijo, Nils Stein, Robbie Waugh
Software Mentions: 1
Published: over 4 years ago
10.1186/1471-2164-13-603
Comparative genomic analysis and phylogenetic position of Theileria equiCited by: 92
Author(s): Lowell S. Kappmeyer, Mathangi Thiagarajan, David R. Herndon, Joshua D. Ramsay, Elisabet Caler, Appolinaire Djikeng, Joseph J. Gillespie, Audrey O.T. Lau, Eric H. Roalson, Joana C. Silva, Marta G. Silva, Carlos E. Suárez, Massaro W. Ueti, Vishvanath Nene, Robert H. Mealey, Donald P. Knowles, Kelly A. Brayton
Software Mentions: 1
Published: about 12 years ago
10.1186/s13073-019-0708-9
Strains used in whole organism Plasmodium falciparum vaccine trials differ in genome structure, sequence, and immunogenic potentialCited by: 50
Author(s): Kara A Moser, Elliott F. Drábek, Ankit Dwivedi, Emily M. Stucke, Jonathan Crabtree, Antoine Dara, Zalak Shah, Matthew Adams, Tao Li, Priscila T. Rodrigues, Sergey Koren, Adam M. Phillippy, James B. Munro, Amed Ouattara, Benjamin C. Sparklin, Julie C. Dunning Hotopp, Kirsten E. Lyke, Lisa Sadzewicz, Luke J. Tallon, Michele Spring, Krisada Jongsakul, Chanthap Lon, David Saunders, Marcelo U. Ferreira, Myaing M. Nyunt, Miriam K. Laufer, Mark A. Travassos, Robert W. Sauerwein, Shannon Takala-Harrison, Claire M. Fraser, B. Kim Lee Sim, Stephen L. Hoffman, Christopher V. Plowe, Joana C. Silva
Software Mentions: 1
Published: almost 5 years ago
10.1074/mcp.RA118.000906
Deciphering Protein Glycosylation by Computational Integration of On-chip Profiling, Glycan-array Data, and Mass SpectrometryCited by: 15
Author(s): Zachary Klamer, Peter Hsueh, David Ayala-Talavera, Brian B. Haab
Software Mentions: 1
Published: almost 6 years ago