Ecosyste.ms: Papers
An open API service providing mapping between scientific papers and software projects that are mentioned in them.
All mentions data is based on the CZI Software Mentions dataset.
Projects: bioconductor: RSVSim
https://packages.ecosyste.ms/registries/bioconductor.org/packages/RSVSim
RSVSim: an R/Bioconductor package for the simulation of structural variations
1 version
Latest release: 10 months ago
20,344 downloads total
Papers Mentioning RSVSim 13
10.3389/fgene.2020.00082
SECNVs: A Simulator of Copy Number Variants and Whole-Exome Sequences From Reference GenomesCited by: 6
Author(s): Yue Xing, Alan R. Dabney, Xiao Li, Guosong Wang, C. A. Gill, Claudio Casola
Software Mentions: 7
Published: over 4 years ago
10.1186/s12864-021-07686-z
Evaluation of tools for identifying large copy number variations from ultra-low-coverage whole-genome sequencing dataCited by: 6
Author(s): Johannes Smolander, Sofia Khan, Kalaimathy Singaravelu, Leni Kauko, Riikka Lund, Asta Laiho, Laura L. Elo
Software Mentions: 6
Published: about 3 years ago
10.1093/gigascience/giab065
SimFFPE and FilterFFPE: improving structural variant calling in FFPE samplesCited by: 4
Author(s): Lanying Wei, Martin Dugas, Sarah Sandmann
Software Mentions: 5
Published: almost 3 years ago
10.1093/gigascience/giy081
SVEngine: an efficient and versatile simulator of genome structural variations with features of cancer clonal evolutionCited by: 14
Author(s): Xia Li, Dongmei Ai, Hojoon Lee, Noemi Andor, Chao Li, Nancy R. Zhang, Hanlee P. Ji
Software Mentions: 4
Published: about 6 years ago
10.1371/journal.pcbi.1007737
SVXplorer: Three-tier approach to identification of structural variants via sequential recombination of discordant cluster signaturesCited by: 0
Author(s): Kunal Kathuria, Aakrosh Ratan
Software Mentions: 4
Published: over 4 years ago
10.1186/s13059-020-01968-7
NanoVar: accurate characterization of patients’ genomic structural variants using low-depth nanopore sequencingCited by: 53
Author(s): Cheng Yong Tham, Roberto Tirado-Magallanes, Yufen Goh, Melissa J. Fullwood, Bryan T. H. Koh, Wilson Wang, Chin Hin Ng, Wee Joo Chng, Alexandre H. Thiéry, Daniel G. Tenen, Touati Benoukraf
Software Mentions: 3
Published: over 4 years ago
10.1016/j.isci.2021.102755
Linearization of genome sequence graphs revisitedCited by: 0
Author(s): A. Lisiecka, Norbert Dojer
Software Mentions: 2
Published: about 3 years ago
10.1093/molbev/msx155
Natural Variation in the Distribution and Abundance of Transposable Elements Across the Caenorhabditis elegans SpeciesCited by: 59
Author(s): Kristen M. Laricchia, Stefan Zdraljevic, Daniel E. Cook, Erik C. Andersen
Software Mentions: 2
Published: about 7 years ago
10.7717/peerj.836
GROM-RD: resolving genomic biases to improve read depth detection of copy number variantsCited by: 25
Author(s): Sean D. Smith, Joseph Kawash, Andrey Grigoriev
Software Mentions: 2
Published: over 9 years ago
10.1186/s13059-017-1213-3
A comparative evaluation of genome assembly reconciliation toolsCited by: 47
Author(s): Hind Alhakami, Hamid Mirebrahim, Stefano Lonardi
Software Mentions: 2
Published: about 7 years ago
10.1186/s12859-015-0502-7
SCNVSim: somatic copy number variation and structure variation simulatorCited by: 29
Author(s): Maochun Qin, Biao Liu, Jeffrey M. Conroy, Carl Morrison, Qiang Hu, Yijun Cheng, Mitsuko Murakami, Adekunle Odunsi, Candace S. Johnson, Lei Wei, Song Liu, Jianmin Wang
Software Mentions: 2
Published: over 9 years ago
10.1093/bioinformatics/btu828
VarSim: a high-fidelity simulation and validation framework for high-throughput genome sequencing with cancer applicationsCited by: 58
Author(s): John C. Mu, Marghoob Mohiyuddin, Jian Li, Narges Bani Asadi, Mark Gerstein, Alexej Abyzov, Wing Hung Wong, Hugo Y. K. Lam
Software Mentions: 1
Published: over 9 years ago
10.1093/gigascience/giaa089
ScanITD: Detecting internal tandem duplication with robust variant allele frequency estimationCited by: 9
Author(s): Ting You Wang, Rendong Yang
Software Mentions: 1
Published: almost 4 years ago