Ecosyste.ms: Papers
An open API service providing mapping between scientific papers and software projects that are mentioned in them.
All mentions data is based on the CZI Software Mentions dataset.
Papers: 10.1186/s12864-021-07686-z
https://doi.org/10.1186/s12864-021-07686-z
Evaluation of tools for identifying large copy number variations from ultra-low-coverage whole-genome sequencing data
Cited by: 6
Author(s): Johannes Smolander, Sofia Khan, Kalaimathy Singaravelu, Leni Kauko, Riikka Lund, Asta Laiho, Laura L. Elo
Published: over 3 years ago
Software Mentions 6
bioconductor: CNAnorm
A normalization method for Copy Number Aberration in cancer samplesPapers that mentioned: 21
bioconductor: HMMcopy
Copy number prediction with correction for GC and mappability bias for HTS dataPapers that mentioned: 18
bioconductor: QDNAseq
Quantitative DNA Sequencing for Chromosomal AberrationsPapers that mentioned: 31
bioconductor: RSVSim
RSVSim: an R/Bioconductor package for the simulation of structural variationsPapers that mentioned: 13
bioconductor: TitanCNA
Subclonal copy number and LOH prediction from whole genome sequencing of tumoursPapers that mentioned: 5