Ecosyste.ms: Papers
An open API service providing mapping between scientific papers and software projects that are mentioned in them.
All mentions data is based on the CZI Software Mentions dataset.
Projects: bioconductor: TitanCNA
https://packages.ecosyste.ms/registries/bioconductor.org/packages/TitanCNA
Subclonal copy number and LOH prediction from whole genome sequencing of tumours
1 version
Latest release: about 1 year ago
20,826 downloads total
Papers Mentioning TitanCNA 5
10.1186/s12864-021-07686-z
Evaluation of tools for identifying large copy number variations from ultra-low-coverage whole-genome sequencing dataCited by: 6
Author(s): Johannes Smolander, Sofia Khan, Kalaimathy Singaravelu, Leni Kauko, Riikka Lund, Asta Laiho, Laura L. Elo
Software Mentions: 6
Published: over 3 years ago
10.3390/microorganisms8060940
Asexual Evolution and Forest Conditions Drive Genetic Parallelism in Phytophthora ramorumCited by: 3
Author(s): Jennifer Yuzon, Renaud Travadon, Mathu Malar C, Sucheta Tripathy, Nathan E. Rank, Heather K. Mehl, David M. Rizzo, Richard C. Cobb, Corinn Small, Tiffany Tang, Haley E. McCown, Matteo Garbelotto, Takao Kasuga
Software Mentions: 4
Published: over 4 years ago
10.3389/fcell.2021.661272
Low-Coverage Whole Genome Sequencing of Cell-Free DNA From Immunosuppressed Cancer Patients Enables Tumor Fraction Determination and Reveals Relevant Copy Number AlterationsCited by: 5
Author(s): Amira Bouzidi, Karim Labreche, Marine Baron, Marianne Veyri, Jérôme Alexandre Denis, Mehdi Touat, Marc Sanson, Frédéric Davi, Erell Guillerm, Stéphanie Jouannet, F. Charlotte, Franck Bielle, Sylvain Choquet, Pierre‐Yves Boëlle, Jacques Cadranel, Véronique Leblond, Brigitte Autran, Jean–Marc Lacorte, Jean‐Philippe Spano, Florence Coulet
Software Mentions: 3
Published: over 3 years ago
10.3389/fgene.2020.00195
Genomic and Transcriptomic Landscape of Tumor Clonal Evolution in CholangiocarcinomaCited by: 3
Author(s): Geng Chen, Zhixiong Cai, Xiaoli Dong, Jing Hua Zhao, Lin Song, Xiaobing Hu, Fange Liu, Xiaolong Liu, Huqing Zhang
Software Mentions: 3
Published: almost 5 years ago
10.3389/fimmu.2020.561234
The Neoantigen Landscape of Mycosis FungoidesCited by: 5
Author(s): Arunima Sivanand, Dylan Hennessey, Aishwarya Iyer, Sandra O’Keefe, Philip Surmanowicz, Gauravi Vaid, Zixuan Xiao, Robert Gniadecki
Software Mentions: 1
Published: about 4 years ago