Ecosyste.ms: Papers

An open API service providing mapping between scientific papers and software projects that are mentioned in them.
All mentions data is based on the CZI Software Mentions dataset.

Projects: bioconductor: TitanCNA

https://packages.ecosyste.ms/registries/bioconductor.org/packages/TitanCNA

Subclonal copy number and LOH prediction from whole genome sequencing of tumours
1 version
Latest release: 10 months ago
20,826 downloads total

Papers Mentioning TitanCNA 5

10.1186/s12864-021-07686-z

Evaluation of tools for identifying large copy number variations from ultra-low-coverage whole-genome sequencing data
Cited by: 6
Author(s): Johannes Smolander, Sofia Khan, Kalaimathy Singaravelu, Leni Kauko, Riikka Lund, Asta Laiho, Laura L. Elo
Software Mentions: 6
Published: about 3 years ago

10.3390/microorganisms8060940

Asexual Evolution and Forest Conditions Drive Genetic Parallelism in Phytophthora ramorum
Cited by: 3
Author(s): Jennifer Yuzon, Renaud Travadon, Mathu Malar C, Sucheta Tripathy, Nathan E. Rank, Heather K. Mehl, David M. Rizzo, Richard C. Cobb, Corinn Small, Tiffany Tang, Haley E. McCown, Matteo Garbelotto, Takao Kasuga
Software Mentions: 4
Published: about 4 years ago

10.3389/fcell.2021.661272

Low-Coverage Whole Genome Sequencing of Cell-Free DNA From Immunosuppressed Cancer Patients Enables Tumor Fraction Determination and Reveals Relevant Copy Number Alterations
Cited by: 5
Author(s): Amira Bouzidi, Karim Labreche, Marine Baron, Marianne Veyri, Jérôme Alexandre Denis, Mehdi Touat, Marc Sanson, Frédéric Davi, Erell Guillerm, Stéphanie Jouannet, F. Charlotte, Franck Bielle, Sylvain Choquet, Pierre‐Yves Boëlle, Jacques Cadranel, Véronique Leblond, Brigitte Autran, Jean–Marc Lacorte, Jean‐Philippe Spano, Florence Coulet
Software Mentions: 3
Published: almost 3 years ago

10.3389/fgene.2020.00195

Genomic and Transcriptomic Landscape of Tumor Clonal Evolution in Cholangiocarcinoma
Cited by: 3
Author(s): Geng Chen, Zhixiong Cai, Xiaoli Dong, Jing Hua Zhao, Lin Song, Xiaobing Hu, Fange Liu, Xiaolong Liu, Huqing Zhang
Software Mentions: 3
Published: over 4 years ago

10.3389/fimmu.2020.561234

The Neoantigen Landscape of Mycosis Fungoides
Cited by: 5
Author(s): Arunima Sivanand, Dylan Hennessey, Aishwarya Iyer, Sandra O’Keefe, Philip Surmanowicz, Gauravi Vaid, Zixuan Xiao, Robert Gniadecki
Software Mentions: 1
Published: over 3 years ago