Ecosyste.ms: Papers

An open API service providing mapping between scientific papers and software projects that are mentioned in them.
All mentions data is based on the CZI Software Mentions dataset.

Papers: 10.3389/fcell.2021.661272

https://doi.org/10.3389/fcell.2021.661272

Low-Coverage Whole Genome Sequencing of Cell-Free DNA From Immunosuppressed Cancer Patients Enables Tumor Fraction Determination and Reveals Relevant Copy Number Alterations

Cited by: 5
Author(s): Amira Bouzidi, Karim Labreche, Marine Baron, Marianne Veyri, Jérôme Alexandre Denis, Mehdi Touat, Marc Sanson, Frédéric Davi, Erell Guillerm, Stéphanie Jouannet, F. Charlotte, Franck Bielle, Sylvain Choquet, Pierre‐Yves Boëlle, Jacques Cadranel, Véronique Leblond, Brigitte Autran, Jean–Marc Lacorte, Jean‐Philippe Spano, Florence Coulet
Published: about 3 years ago

Software Mentions 3

bioconductor: HMMcopy
Copy number prediction with correction for GC and mappability bias for HTS data
Papers that mentioned: 18
bioconductor: TitanCNA
Subclonal copy number and LOH prediction from whole genome sequencing of tumours
Papers that mentioned: 5
cran: STAR
Spike Train Analysis with R
Papers that mentioned: 5,759