Ecosyste.ms: Papers
An open API service providing mapping between scientific papers and software projects that are mentioned in them.
All mentions data is based on the CZI Software Mentions dataset.
Projects: bioconductor: affycomp
https://packages.ecosyste.ms/registries/bioconductor.org/packages/affycomp
Graphics Toolbox for Assessment of Affymetrix Expression Measures
1 version
Latest release: 7 months ago
55,818 downloads total
Papers Mentioning affycomp 13
10.1186/1471-2105-12-464
From hybridization theory to microarray data analysis: performance evaluationCited by: 4
Author(s): Fabrice Berger, Enrico Carlon
Software Mentions: 8
Published: over 12 years ago
10.1186/1471-2105-7-511
Statistical analysis of an RNA titration series evaluates microarray precision and sensitivity on a whole-array basisCited by: 23
Author(s): Andrew Holloway, Alicia Oshlack, Dileepa S. Diyagama, David D.L. Bowtell, Gordon K. Smyth
Software Mentions: 4
Published: over 17 years ago
10.1186/1471-2105-8-273
The utility of MAS5 expression summary and detection call algorithmsCited by: 144
Author(s): Stuart D Pepper, Emma Saunders, Laura Edwards, Claire Wilson, Crispin Miller
Software Mentions: 4
Published: almost 17 years ago
10.1155/2013/167915
Correction of Spatial Bias in Oligonucleotide Array DataCited by: 2
Author(s): Philippe Serhal, Sébastien Lemieux
Software Mentions: 4
Published: about 11 years ago
10.1186/1471-2105-8-108
Transcript-based redefinition of grouped oligonucleotide probe sets using AceView: High-resolution annotation for microarraysCited by: 52
Author(s): Jun Lü, Joseph C. Lee, Marc Salit, Margaret C. Cam
Software Mentions: 3
Published: about 17 years ago
10.1186/1471-2105-11-583
Preprocessing of gene expression data by optimally robust estimatorsCited by: 15
Author(s): Matthias Kohl, Hans‐Peter Deigner
Software Mentions: 3
Published: over 13 years ago
10.1186/gb-2008-9-4-r63
Validation and extension of an empirical Bayes method for SNP calling on Affymetrix microarraysCited by: 36
Author(s): Shin Lin, Benilton Carvalho, David J. Cutler, Dan E. Arking, Aravinda Chakravarti, Rafael A. Irizarry
Software Mentions: 2
Published: over 16 years ago
10.1186/1471-2105-9-140
Normalization of oligonucleotide arrays based on the least-variant set of genesCited by: 51
Author(s): Stefano Calza, Davide Valentini, Yudi Pawitan
Software Mentions: 2
Published: about 16 years ago
10.1186/1471-2105-6-65
Cited by: 21Author(s): Mayte Suárez‐Fariñas, Asifa Haider, Knut M. Wittkowski
Software Mentions: 2
Published: over 19 years ago
10.1186/1471-2105-12-383
caCORRECT2: Improving the accuracy and reliability of microarray data in the presence of artifactsCited by: 15
Author(s): Richard A. Moffitt, Qiqin Yin-Goen, Todd H. Stokes, R. Mitchell Parry, James H Torrance, John H. Phan, Andrew N. Young, May D. Wang
Software Mentions: 2
Published: over 12 years ago
10.1186/s12864-016-2750-y
Comprehensive analyses of the annexin gene family in wheatCited by: 44
Author(s): Lei Xu, Yimiao Tang, Shiqing Gao, Shichao Su, Hong Lin, Weiwei Wang, Zhaofeng Fang, Xueyin Li, Jinxiu Ma, Wei Quan, Hui Sun, Xia Li, Yongbo Wang, Xiangzheng Liao, Jiangang Gao, Fengting Zhang, Lei Li, Changping Zhao
Software Mentions: 2
Published: almost 8 years ago
10.1186/1471-2164-8-96
Fisher's combined p-value for detecting differentially expressed genes using Affymetrix expression arraysCited by: 48
Author(s): Ann Hess, Hari Iyer
Software Mentions: 2
Published: over 17 years ago
10.1186/1471-2105-7-464
A summarization approach for Affymetrix GeneChip data using a reference training set from a large, biologically diverse databaseCited by: 77
Author(s): Simon Katz, Rafael A. Irizarry, Xue Lü, Mark Tripputi, Mark W. Porter
Software Mentions: 1
Published: over 17 years ago