Ecosyste.ms: Papers

An open API service providing mapping between scientific papers and software projects that are mentioned in them.
All mentions data is based on the CZI Software Mentions dataset.

Projects: pypi: graphmap

https://packages.ecosyste.ms/registries/pypi.org/packages/graphmap

Images on a quad graph. Create an infinite canvas
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Latest release: almost 8 years ago
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Papers Mentioning graphmap 13

Genome, transcriptome and secretome analyses of the antagonistic, yeast-like fungus Aureobasidium pullulans to identify potential biocontrol genes
Cited by: 13
Author(s): Maria Paula Rueda‐Mejia, Lukas Nägeli, Stefanie Lutz, Richard D. Hayes, Adithi R. Varadarajan, Igor V. Grigoriev, Christian H. Ahrens, Florian M. Freimoser
Software Mentions: 9
Published: over 3 years ago

10.7717/peerj.8111

From command-line bioinformatics to bioGUI
Cited by: 4
Author(s): Markus Joppich, Ralf Zimmer
Software Mentions: 7
Published: about 5 years ago

10.3390/ijms22189824

Species-Specific Humoral Immune Responses in Sheep and Goats upon Small Ruminant Lentivirus Infections Inversely Correlate with Protection against Virus Replication and Pathological Lesions
Cited by: 2
Author(s): Rodolphe Michiels, Stefan Roels, Nick Vereecke, Élisabeth Mathijs, Laurent Mostin, Nick De Regge
Software Mentions: 6
Published: about 3 years ago

10.1186/s40168-020-00981-z

Discovery of novel community-relevant small proteins in a simplified human intestinal microbiome
Cited by: 17
Author(s): Hannes Petruschke, Christian Schori, Sebastian Canzler, Sarah Riesbeck, Anja Poehlein, Rolf Daniel, Daniel Frei, Tina Segessemann, Johannes Zimmerman, Γεώργιος Μαρίνος, Christoph Kaleta, Nico Jehmlich, Christian H. Ahrens, Martin von Bergen
Software Mentions: 4
Published: over 3 years ago

10.1371/journal.pone.0216709

Reading canonical and modified nucleobases in 16S ribosomal RNA using nanopore native RNA sequencing
Cited by: 126
Author(s): Andrew Smith, Miten Jain, Logan Mulroney, Daniel R. Garalde, Mark Akeson
Software Mentions: 4
Published: over 5 years ago

10.3389/fmicb.2019.02610

Genetic, Epigenetic and Phenotypic Diversity of Four Bacillus velezensis Strains Used for Plant Protection or as Probiotics
Cited by: 29
Author(s): Oleg N. Reva, Dirk Swanevelder, Liberata Mwita, Aneth David Mwakilili, Dillon Muzondiwa, Monique Joubert, Wai Chan, Stefanie Lutz, Christian H. Ahrens, Lylia V. Avdeeva, М. А. Хархота, Donatha Damian Tibuhwa, Sylvester Leonard Lyantagaye, Joachim Vater, Rainer Borriss, Johan Meijer
Software Mentions: 3
Published: about 5 years ago

10.3390/vaccines9060594

Comparison of Primary Virus Isolation in Pulmonary Alveolar Macrophages and Four Different Continuous Cell Lines for Type 1 and Type 2 Porcine Reproductive and Respiratory Syndrome Virus
Cited by: 3
Author(s): Jiexiong Xie, Nick Vereecke, Sebastiaan Theuns, Dayoung Oh, Nathalie Vanderheijden, Ivan Trus, Jannes Sauer, Philip Vyt, Caroline Bonckaert, Christian Lalonde, Chantale Provost, Carl A. Gagnon, Hans Nauwynck
Software Mentions: 3
Published: over 3 years ago

10.1534/g3.119.400023

Adenine Methylation in <i>Drosophila</i> Is Associated with the Tissue-Specific Expression of Developmental and Regulatory Genes
Cited by: 19
Author(s): Kinnary Shah, Weihuan Cao, Chris Ellison
Software Mentions: 3
Published: over 5 years ago

10.1186/s13024-018-0274-4

Long-read sequencing across the C9orf72 ‘GGGGCC’ repeat expansion: implications for clinical use and genetic discovery efforts in human disease
Cited by: 90
Author(s): Mark T. W. Ebbert, Stefan L. Farrugia, Jonathon P. Sens, Karen Jansen-West, Tania F. Gendron, Mercedes Prudencio, Ian McLaughlin, Brett Bowman, Matthew G. Seetin, Mariely DeJesus-Hernandez, Jazmyne L. Jackson, Patricia E. Brown, Dennis W. Dickson, Marka van Blitterswijk, Rosa Rademakers, Leonard Petrucelli, John Denis Fryer
Software Mentions: 3
Published: over 6 years ago

10.1093/gigascience/giy037

Chiron: translating nanopore raw signal directly into nucleotide sequence using deep learning
Cited by: 122
Author(s): Haotian Teng, Minh Duc Cao, Michael B. Hall, Tânia Duarte, Sheng Wang, Lachlan Coin
Software Mentions: 2
Published: over 6 years ago

10.3389/fmicb.2019.00924

An Integrated Systems Approach Unveils New Aspects of Microoxia-Mediated Regulation in Bradyrhizobium diazoefficiens
Cited by: 20
Author(s): Noemí Fernández, Juan J. Cabrera, Adithi R. Varadarajan, Stefanie Lutz, Raphael Ledermann, Bernd Roschitzki, Leo Eberl, Eulogio J. Bedmar, Hans‐Martin Fischer, Gabriella Pessi, Christian H. Ahrens, Socorro Mesa
Software Mentions: 2
Published: over 5 years ago

10.1038/s41438-019-0125-7

Low-cost assembly of a cacao crop genome is able to resolve complex heterozygous bubbles
Cited by: 4
Author(s): Joe Morrissey, J. Conrad Stack, Rebecca Valls, Juan Carlos Motamayor
Software Mentions: 1
Published: over 5 years ago

10.1038/s41598-017-18364-0

Nanopore DNA Sequencing and Genome Assembly on the International Space Station
Cited by: 235
Author(s): Sarah L. Castro-Wallace, Charles Y. Chiu, Kristen K. John, Sarah E. Stahl, Kathleen H. Rubins, Alexa B. R. McIntyre, Jason P. Dworkin, Mark Lupisella, David J. Smith, Douglas J. Botkin, Timothy Stephenson, Sissel Juul, Daniel J. Turner, F. Izquierdo, Scot Federman, Doug Stryke, Sneha Somasekar, Noah Alexander, Guixia Yu, Christopher E. Mason, Aaron S. Burton
Software Mentions: 1
Published: almost 7 years ago