Ecosyste.ms: Papers

An open API service providing mapping between scientific papers and software projects that are mentioned in them.
All mentions data is based on the CZI Software Mentions dataset.

Projects: pypi: omics

https://packages.ecosyste.ms/registries/pypi.org/packages/omics

omics: A Python package for omics data analysis.
3 versions
Latest release: almost 8 years ago
7 downloads last month

Papers Mentioning omics 13

Integrated Meta-omics Reveals a Fungus-Associated Bacteriome and Distinct Functional Pathways in Clostridioides difficile Infection
Cited by: 24
Author(s): David B. Stewart, Justin Wright, Maria Fowler, Christopher J. McLimans, Vasily Tokarev, Isabella Amaniera, Owen Baker, Hoi‐Tong Wong, Jeffrey L. Brabec, Rebecca Drucker, Regina Lamendella
Software Mentions: 6
Published: about 5 years ago

10.1371/journal.pcbi.1008182

MONET: Multi-omic module discovery by omic selection
Cited by: 9
Author(s): Nimrod Rappoport, Roy Safra, Ron Shamir
Software Mentions: 5
Published: about 4 years ago

10.3389/fimmu.2018.01620

Footprints of Sepsis Framed Within Community Acquired Pneumonia in the Blood Transcriptome
Cited by: 26
Author(s): Lydia Hopp, Henry Loeffler‐Wirth, Lilit Nersisyan, Arsen Arakelyan, Hans Binder
Software Mentions: 3
Published: about 6 years ago

10.3389/fpsyt.2021.685656

Metabolic Profiling Indicates Diversity in the Metabolic Physiologies Associated With Maternal Postpartum Depressive Symptoms
Cited by: 4
Author(s): Emma Bränn, Christina J. Malavaki, Emma Fransson, Maria-Konstantina Ioannidi, Hanna Henriksson, Fotios C. Papadopoulos, George P. Chrousos, Maria I. Klapa, Alkistis Skalkidou
Software Mentions: 3
Published: about 3 years ago

10.3390/genes10070522

Sperm Proteome Analysis and Identification of Fertility-Associated Biomarkers in Unexplained Male Infertility
Cited by: 36
Author(s): Manesh Kumar Panner Selvam, Ashok Agarwal, Peter Natesan Pushparaj, Saradha Baskaran, Hocine Bendou
Software Mentions: 3
Published: about 5 years ago

10.1093/ije/dyaa188

Metabolic profiles of socio-economic position: a multi-cohort analysis
Cited by: 9
Author(s): Oliver Robinson, Alice R Carter, Mika Ala‐Korpela, Juan P. Casas, Nishi Chaturvedi, Jorgen Engmann, Laura D Howe, Alun D. Hughes, Marjo‐Riitta Järvelin, Mika Kähönen, Ville Karhunen, Diana Kuh, Tina Shah, Yoav Ben‐Shlomo, Reecha Sofat, Chung-Ho E Lau, Terho Lehtimäki, Usha Menon, Olli T. Raitakari, Andy Ryan, Rui Providência, Stephanie Smith, Julie Taylor, Therese Tillin, Jorma Viikari, Andrew Wong, Aroon D. Hingorani, Mika Kivimäki, Paolo Víneis
Software Mentions: 3
Published: almost 4 years ago

10.3389/fmicb.2021.706044

Improving Fungal Cultivability for Natural Products Discovery
Cited by: 11
Author(s): Teppo Rämä, C. Alisha Quandt
Software Mentions: 2
Published: about 3 years ago

10.3389/fgene.2020.555886

Exploring the Limits of Combined Image/'omics Analysis for Non-cancer Histological Phenotypes
Cited by: 6
Author(s): Paul J. Gallins, Ehsan Saghapour, Yi‐Hui Zhou
Software Mentions: 2
Published: almost 4 years ago

10.3390/biology10020129

Metabolic Reprogramming, Questioning, and Implications for Cancer
Cited by: 8
Author(s): Pierre Jacquet, Angélique Stéphanou
Software Mentions: 2
Published: over 3 years ago

10.3390/life11060574

Identification of Metabolic Phenotypes in Young Adults with Obesity by 1H NMR Metabolomics of Blood Serum
Cited by: 10
Author(s): Khin Thandar Htun, Jie Pan, Duanghathai Pasanta, Montree Tungjai, Chatchanok Udomtanakunchai, Sirirat Chancharunee, S. Kaewjaeng, Hong Joo Kim, J. Kaewkhao, S. Kothan
Software Mentions: 2
Published: about 3 years ago

10.1111/pbi.13247

<i>Ta<scp>CYP</scp>81D5</i>, one member in a wheat cytochrome P450 gene cluster, confers salinity tolerance via reactive oxygen species scavenging
Cited by: 53
Author(s): Meng Wang, Jiarui Yuan, Lumin Qin, Weiming Shi, Guangmin Xia, Shuwei Liu
Software Mentions: 2
Published: almost 5 years ago

10.1002/ece3.5576

The past, present, and future of coral heat stress studies
Cited by: 75
Author(s): Maha J. Cziesielski, Sebastian Schmidt‐Roach, Manuel Aranda
Software Mentions: 2
Published: about 5 years ago

10.1186/1471-2164-11-1

Adaptation of Hansenula polymorpha to methanol: a transcriptome analysis
Cited by: 235
Author(s): Tim van Zutphen, Richard J. S. Baerends, Kim A. Susanna, Anne de Jong, Oscar P. Kuipers, Marten Veenhuis, Ida J. van der Klei
Software Mentions: 2
Published: over 14 years ago