Ecosyste.ms: Papers

An open API service providing mapping between scientific papers and software projects that are mentioned in them.
All mentions data is based on the CZI Software Mentions dataset.

Projects: pypi: Arrays

https://packages.ecosyste.ms/registries/pypi.org/packages/Arrays

Python library for storing and reading stored arrays.
2 versions
Latest release: almost 6 years ago
218 downloads last month

Papers Mentioning Arrays 13

Meeting report from the fourth meeting of the Computational Modeling in Biology Network (COMBINE)
Cited by: 21
Author(s): Dagmar Waltemath, Frank Bergmann, Claudine Chaouiya, Tobias Czauderna, Padraig Gleeson, Carole Goble, Martin Golebiewski, Michael Hucka, Nick Juty, Olga Krebs, Nicolas Le Novère, Huaiyu Mi, Ion I. Moraru, Chris J. Myers, David Nickerson, Brett G. Olivier, Nicolás Rodríguez, Falk Schreiber, Lucian P. Smith, Fengkai Zhang, Eric Bonnet
Software Mentions: 4
Published: over 10 years ago

10.3389/fimmu.2018.01223

Autophagy Impairment Is Associated With Increased Inflammasome Activation and Reversal Reaction Development in Multibacillary Leprosy
Cited by: 14
Author(s): Mayara Garcia de Mattos Barbosa, Bruno Jorge de Andrade Silva, Tayná Quintella Assis, Rhana Berto da Silva Prata, Helen Ferreira, Priscila Ribeiro Andrade, Jéssica Araújo da Paixão de Oliveira, Gilberto Marcelo Sperandio da Silva, José Augusto da Costa Nery, Euzenir Nunes Sarno, Roberta Olmo Pinheiro
Software Mentions: 3
Published: over 6 years ago

10.1371/journal.pone.0051693

StRAP: An Integrated Resource for Profiling High-Throughput Cancer Genomic Data from Stress Response Studies
Cited by: 0
Author(s): Seth Johnson, Biju Issac, Shuping Zhao, Mohit Bisht, Orieta Celiku, Philip J. Tofilon, Kevin Camphausen, Uma Shankavaram
Software Mentions: 2
Published: almost 12 years ago

10.15252/msb.20199110

<scp>SBML</scp> Level 3: an extensible format for the exchange and reuse of biological models
Cited by: 143
Author(s): Sarah M. Keating, Dagmar Waltemath, Matthias König, Fengkai Zhang, Andreas Dräger, Claudine Chaouiya, Frank Bergmann, Andrew Finney, Colin S. Gillespie, Tomáš Helikar, Stefan Hoops, Rahuman S. Malik Sheriff, Stuart Moodie, Ion I. Moraru, Chris J. Myers, Aurélien Naldi, Brett G. Olivier, Sven Sahle, James C. Schaff, Lucian P. Smith, Maciej Swat, Denis Thieffry, Leandro Watanabe, Darren J. Wilkinson, Michael L. Blinov, Kimberly Begley, James R. Faeder, Harold F. Gómez, Thomas M. Hamm, Yuichiro Inagaki, Wolfram Liebermeister, Allyson L. Lister, Daniel Lucio, Eric Mjolsness, Carole J. Proctor, Karthik Raman, Nicolás Rodríguez, Clifford A. Shaffer, Bruce E. Shapiro, Joerg Stelling, Neil Swainston, Naoki Tanimura, John Wagner, Martin Meier‐Schellersheim, Herbert M. Sauro, Bernhard Ø. Palsson, Hamid Bolouri, Hiroaki Kitano, Akira Funahashi, Henning Hermjakob, John C. Doyle, Michael Hucka, Richard Adams, Nicholas Allen, B. Angermann, Marco Antoniotti, Gary D. Bader, Jan Červený, Mélanie Courtot, Chris D. Cox, Piero Dalle Pezze, Emek Demir, William S. Denney, Harish Dharuri, Julien Dorier, Dirk Drasdo, Ali Ebrahim, Johannes Eichner, Johan Elf, Lukas Endler, Chris T. Evelo, Christoph Flamm, Ronan M. T. Fleming, Martina Fröhlich, Mihai Glonț, Emanuel Gonçalvès, Martin Golebiewski, Hovakim Grabski, Alex Gutteridge, Damon Hachmeister, Leonard A. Harris, Benjamin D. Heavner, Ron Henkel, William S. Hlavacek, Bin Hu, Daniel R. Hyduke, Hidde de Jong, Nick Juty, Peter D. Karp, Jonathan R. Karr, Douglas B. Kell, Roland Keller, Ilya Kiselev, Steffen Klamt, Edda Klipp, Christian Knüpfer, Fedor A. Kolpakov, Falko Krause, Martina Kutmon, Camille Laibe, Conor Lawless, Lü Li, Leslie M. Loew, Rainer Machné, Yoshikazu Matsuoka, Pedro Mendes, Huaiyu Mi, Florian Mittag, Pedro T. Monteiro, Kedar Nath Natarajan, Poul M. F. Nielsen, Tramy Nguyen, Alida Palmisano, Jean Baptiste Pettit, Thomas Pfau, Robert D. Phair, Tomas Radivoyevitch, Johann M. Rohwer, Oliver Ruebenacker, Julio Sáez-Rodríguez, Martin Scharm, Henning Schmidt, Falk Schreiber, Michaël Schubert, Roman Schulte, Stuart C. Sealfon, Kieran Smallbone, Sylvain Soliman, Melanie I. Stefan, Devin P. Sullivan, Koichi Takahashi, Bas Teusink, David Tolnay, Ibrahim Vazirabad, Axel von Kamp, Ulrike Wittig, Clemens Wrzodek, Finja Wrzodek, Ioannis Xénarios, Anna Zhukova, Jeremy Zucker
Software Mentions: 2
Published: over 4 years ago

10.1371/journal.pone.0008699

RNA Microarray Analysis in Prenatal Mouse Cochlea Reveals Novel IGF-I Target Genes: Implication of MEF2 and FOXM1 Transcription Factors
Cited by: 77
Author(s): Hortensia Sánchez-Calderón, Lourdes Rodríguez-de la Rosa, Marta Milo, José G. Pichel, Matthew C. Holley, Isabel Varela-Nieto
Software Mentions: 2
Published: almost 15 years ago

10.1186/1471-2105-7-535

PageMan: An interactive ontology tool to generate, display, and annotate overview graphs for profiling experiments
Cited by: 309
Author(s): Björn Usadel, Axel Nagel, Dirk Steinhauser, Yves Gibon, Oliver E. Bläsing, Henning Redestig, Nese Sreenivasulu, Leonard Krall, Matthew A. Hannah, Fabien Porée, Alisdair R. Fernie, Mark Stitt
Software Mentions: 2
Published: almost 18 years ago

10.1186/1471-2164-9-328

Cross-platform comparison of SYBR® Green real-time PCR with TaqMan PCR, microarrays and other gene expression measurement technologies evaluated in the MicroArray Quality Control (MAQC) study
Cited by: 151
Author(s): Emi Arikawa, Yuhang Sun, Jie Wang, Qiong Zhou, Baitang Ning, Stacey L. Dial, Lei Guo, Jingping Yang
Software Mentions: 1
Published: over 16 years ago

10.1038/s41419-018-0286-6

Let-7c inhibits cholangiocarcinoma growth but promotes tumor cell invasion and growth at extrahepatic sites
Cited by: 17
Author(s): Yu Xie, Hang Zhang, Xiaomao Guo, Yechen Feng, Ruizhi He, Li Xu, Shuo Yu, Yan Zhao, Ming Shen, Feng Zhu, Xin Wang, Min Wang, Asha Balakrishnan, Michael Ott, Feng Peng, Renyi Qin
Software Mentions: 1
Published: almost 7 years ago

10.1186/s12864-020-6525-0

Transcriptome analyses of liver in newly-hatched chicks during the metabolic perturbation of fasting and re-feeding reveals THRSPA as the key lipogenic transcription factor
Cited by: 14
Author(s): Larry A. Cogburn, Nares Trakooljul, Xiaofei Wang, Laura E. Ellestad, Tom E. Porter
Software Mentions: 1
Published: almost 5 years ago

10.3389/fnmol.2016.00132

Sensory Input-Dependent Changes in Glutamatergic Neurotransmission- Related Genes and Proteins in the Adult Rat Trigeminal Ganglion
Cited by: 9
Author(s): Julia Fernández-Montoya, Izaskun Buendía, Yasmina B. Martín, Javier Egea, Pilar Negredo, Carlos Avendaño
Software Mentions: 1
Published: almost 8 years ago

10.1371/journal.pone.0219610

Glyphosate-based herbicides at low doses affect canonical pathways in estrogen positive and negative breast cancer cell lines
Cited by: 31
Author(s): Elaine Stur, Andrés Felipe Aristizábal-Pachón, Kamila Chagas Peronni, Lidiane Pignaton Agostini, Sabine Waigel, Julia H. Chariker, Donald M. Miller, Shelia D. Thomas, Francine Rezzoug, Raquel Spinassé Detogni, Ruth Reis, Wilson A. Silva, Iúri Drumond Louro
Software Mentions: 1
Published: over 5 years ago

10.1038/sdata.2017.128

Database of multi-parametric geophysical data from the TOMO-DEC experiment on Deception Island, Antarctica
Cited by: 7
Author(s): Jesús M. Ibáñez, Alejandro Díaz‐Moreno, Janire Prudencio, D. Zandomeneghi, William S. D. Wilcock, Allan G. Barclay, Javier Almendros, Carmen Benítez, Araceli García-Yeguas, Gerardo Alguacil
Software Mentions: 1
Published: about 7 years ago