Ecosyste.ms: Papers

An open API service providing mapping between scientific papers and software projects that are mentioned in them.
All mentions data is based on the CZI Software Mentions dataset.

Projects: bioconductor: metaMS

https://packages.ecosyste.ms/registries/bioconductor.org/packages/metaMS

MS-based metabolomics annotation pipeline
1 version
Latest release: about 1 year ago
1 dependent package
20,640 downloads total

Papers Mentioning metaMS 13

10.3390/metabo9100200

The metaRbolomics Toolbox in Bioconductor and beyond
Cited by: 61
Author(s): Jan Stanstrup, Corey D. Broeckling, Rick Helmus, Nils Hoffmann, Ewy A. Mathé, Thomas Naake, Luca Nicolotti, Kristian Peters, Johannes Michael Rainer, Reza M. Salek, Tobias Schulze, Emma L. Schymanski, Michael A. Stravs, Etienne Thévenot, Hendrik Treutler, Ralf Weber, Egon Willighagen, Michael Witting, Steffen Neumann
Software Mentions: 92
Published: about 5 years ago

10.1186/s12859-020-03786-x

IP4M: an integrated platform for mass spectrometry-based metabolomics data mining
Cited by: 32
Author(s): Dandan Liang, Quan Liu, Kejun Zhou, Jia Wang, Guoxiang Xie, Tianlu Chen
Software Mentions: 11
Published: about 4 years ago

10.1007/s11306-017-1242-7

Navigating freely-available software tools for metabolomics analysis
Cited by: 165
Author(s): Rachel Spicer, Reza M. Salek, Pablo Moreno-Ger, Daniel Cañueto, Christoph Steinbeck
Software Mentions: 8
Published: over 7 years ago

10.7554/eLife.64478

Microbiota functional activity biosensors for characterizing nutrient metabolism in vivo
Cited by: 7
Author(s): Darryl A. Wesener, Zachary Beller, Samantha L. Peters, Amir Rajabi, Gianluca Dimartino, Richard J. Giannone, Robert L. Hettich, Jeffrey I. Gordon
Software Mentions: 5
Published: over 3 years ago

10.3390/metabo10040143

Metabolomics Benefits from Orbitrap GC–MS—Comparison of Low- and High-Resolution GC–MS
Cited by: 29
Author(s): Daniel Stettin, Remington X. Poulin, Georg Pohnert
Software Mentions: 4
Published: over 4 years ago

10.12688/f1000research.11823.1

Analytical challenges of untargeted GC-MS-based metabolomics and the critical issues in selecting the data processing strategy
Cited by: 19
Author(s): Ting-Li Han, Yang Yang, Hua Zhang, KT Law
Software Mentions: 4
Published: over 7 years ago

10.3390/foods10092061

Comparison of Automated Extraction Techniques for Volatile Analysis of Whole Milk Powder
Cited by: 17
Author(s): Ziqiang Cheng, David T. Mannion, Maurice G. O’Sullivan, Song Miao, Joseph P. Kerry, Kieran N. Kilcawley
Software Mentions: 4
Published: about 3 years ago

10.3390/metabo9090171

WiPP: Workflow for Improved Peak Picking for Gas Chromatography-Mass Spectrometry (GC-MS) Data
Cited by: 18
Author(s): Nico Borgsmüller, Yoann Gloaguen, Tobias Opialla, Eric Blanc, Emilie Sicard, Anne-Lise Royer, Bruno Le Bizec, Stéphanie Durand, Carole Migné, Mélanie Petera, Estelle Pujos‐Guillot, Franck Giacomoni, Yann Guitton, Dieter Beule, Jennifer Kirwan
Software Mentions: 4
Published: over 5 years ago

10.1371/journal.pone.0230813

Metabolic reprograming of LPS-stimulated human lung macrophages involves tryptophan metabolism and the aspartate-arginosuccinate shunt
Cited by: 14
Author(s): Fanta Fall, Elodie Lamy, Marion Brollo, Emmanuel Naline, Natacha Lenuzza, Etienne Thévenot, Philippe Devillier, Stanislas Grassin-Delyle
Software Mentions: 4
Published: over 4 years ago

10.1016/j.csbj.2020.09.033

Deep metabolome: Applications of deep learning in metabolomics
Cited by: 76
Author(s): Yotsawat Pomyen, Kwanjeera Wanichthanarak, Patcha Poungsombat, Johannes F. Fahrmann, Dmitry Grapov, Sakda Khoomrung
Software Mentions: 4
Published: almost 5 years ago

10.1111/tpj.14649

Metabolite database for root, tuber, and banana crops to facilitate modern breeding in understudied crops
Cited by: 32
Author(s): Elliott J. Price, Margit Drapal, Laura Pérez-Fons, Delphine Amah, Ranjana Bhattacharjee, Bettina Heider, Mathieu Rouard, Rony Swennen, Luís Augusto Becerra López-Lavalle
Software Mentions: 2
Published: almost 5 years ago

10.3389/fbioe.2014.00072

MetaDB a Data Processing Workflow in Untargeted MS-Based Metabolomics Experiments
Cited by: 27
Author(s): Pietro Franceschi, Roman Mylonas, Nir Shahaf, Matthias Scholz, Panagiotis Arapitsas, Domenico Masuero, Georg Weingart, Silvia Carlin, Urška Vrhovšek, Fulvio Mattivi, Ron Wehrens
Software Mentions: 2
Published: almost 10 years ago

10.3389/fbioe.2016.00063

Editorial: Metabolome Informatics and Statistics: Current State and Emerging Trends
Cited by: 2
Author(s): Adam J. Carroll, Reza M. Salek, Masanori Arita, Joachim Kopka, Dirk Walther
Software Mentions: 2
Published: over 8 years ago