Ecosyste.ms: Papers

An open API service providing mapping between scientific papers and software projects that are mentioned in them.
All mentions data is based on the CZI Software Mentions dataset.

Projects: pypi: StochPy

https://packages.ecosyste.ms/registries/pypi.org/packages/StochPy

StochPy (Stochastic modeling in Python) provides several stochastic simulation algorithms to simulate (bio)chemical systems of reactions in a stochastic manner.
13 versions
Latest release: over 3 years ago
47 downloads last month

Papers Mentioning StochPy 13

10.3390/computation6010009

An Overview of Network-Based and -Free Approaches for Stochastic Simulation of Biochemical Systems
Cited by: 13
Author(s): Abhishekh Gupta, Pedro Mendes
Software Mentions: 2
Published: about 7 years ago

10.1371/journal.pone.0226453

Theoretical investigation of a genetic switch for metabolic adaptation
Cited by: 4
Author(s): Kathrin Sofia Laxhuber, Muir J. Morrison, Griffin Chure, Nathan M. Belliveau, Charlotte Strandkvist, Kyle L. Naughton, Rob Phillips
Software Mentions: 2
Published: almost 5 years ago

10.1371/journal.pone.0079345

StochPy: A Comprehensive, User-Friendly Tool for Simulating Stochastic Biological Processes
Cited by: 77
Author(s): Timo Maarleveld, Brett G. Olivier, Frank J. Bruggeman
Software Mentions: 2
Published: about 11 years ago

10.1371/currents.outbreaks.4d41fe5d6c05e9df30ddce33c66d084c

Modeling the Impact of Interventions on an Epidemic of Ebola in Sierra Leone and Liberia
Cited by: 162
Author(s): Caitlin Rivers, Eric Lofgren, Madhav V. Marathe, Stephen Eubank, Bryan Lewis
Software Mentions: 1
Published: about 11 years ago

10.1371/journal.pone.0130574

Pools versus Queues: The Variable Dynamics of Stochastic “Steady States”
Cited by: 5
Author(s): Eric Lofgren
Software Mentions: 1
Published: over 9 years ago

10.1007/978-3-030-53288-8_32

SeQuaiA: A Scalable Tool for Semi-Quantitative Analysis of Chemical Reaction Networks
Cited by: 2
Author(s): Milan Češka, Calvin Chau, Jan Křetínský
Software Mentions: 1
Published: about 5 years ago

10.1186/1756-8935-7-30

Mechanistic stochastic model of histone modification pattern formation
Cited by: 17
Author(s): Lisette C M Anink-Groenen, Timo Maarleveld, Pernette J. Verschure, Frank J. Bruggeman
Software Mentions: 1
Published: over 10 years ago

10.1038/s41598-017-15895-4

Statistics and simulation of growth of single bacterial cells: illustrations with B. subtilis and E. coli
Cited by: 37
Author(s): Johan van Heerden, Hermannus Kempe, Anne Doerr, Timo Maarleveld, Niclas Nordholt, Frank J. Bruggeman
Software Mentions: 1
Published: about 7 years ago

10.3390/ijerph17051500

Assessing the Potential Impact of a Long-Acting Skin Disinfectant in the Prevention of Methicillin-Resistant Staphylococcus aureus Transmission
Cited by: 0
Author(s): Christopher T Short, Matthew S Mietchen, Eric Lofgren
Software Mentions: 1
Published: almost 5 years ago

10.1186/s12859-015-0596-y

MONALISA for stochastic simulations of Petri net models of biochemical systems
Cited by: 20
Author(s): Pavel Balazki, Klaus Lindauer, Jens Einloft, Jörg Ackermann, Ina Koch
Software Mentions: 1
Published: over 9 years ago

10.3390/ijerph18168260

Excess Risk of COVID-19 to University Populations Resulting from In-Person Sporting Events
Cited by: 5
Author(s): Stephanie S. Johnson, Katelin C Jackson, Matthew S Mietchen, Samir Sbai, Ernest Schwartz, Eric Lofgren
Software Mentions: 1
Published: over 3 years ago

10.1186/s12879-017-2632-1

Estimating the impact of post randomization changes in staff behavior in infection prevention trials: a mathematical modeling approach
Cited by: 8
Author(s): Eric Lofgren
Software Mentions: 1
Published: over 7 years ago

10.1371/currents.outbreaks.fd38dd85078565450b0be3fcd78f5ccf

Modeling the Impact of Interventions on an Epidemic of Ebola in Sierra Leone and Liberia
Cited by: 24
Author(s): Caitlin Rivers, Eric Lofgren, Madhav V. Marathe, Stephen Eubank, Bryan Lewis
Software Mentions: 1
Published: about 11 years ago