Ecosyste.ms: Papers

10.1186/1471-2105-12-467

Empirical comparison of cross-platform normalization methods for gene expression data
Cited by: 88
Author(s): Jason R. Rudy, Faramarz Valafar
Software Mentions: 8
Published: almost 13 years ago

10.7554/eLife.35854

GABA, not BOLD, reveals dissociable learning-dependent plasticity mechanisms in the human brain
Cited by: 36
Author(s): Polytimi Frangou, Marta Correia, Zoe Kourtzi
Software Mentions: 5
Published: about 6 years ago

10.3389/fmicb.2016.00459

Characterization of the Gut Microbiome Using 16S or Shotgun Metagenomics
Cited by: 585
Author(s): Juan Jovel, Jordan Patterson, Weiwei Wang, Naomi Hotte, Sandra O’Keefe, Troy Mitchel, Troy Perry, Dina Kao, Andrew L. Mason, Karen Madsen, Gane Ka‐Shu Wong
Software Mentions: 5
Published: over 8 years ago

10.1038/s41598-021-81193-9

INSPECTOR: free software for magnetic resonance spectroscopy data inspection, processing, simulation and analysis
Cited by: 21
Author(s): Martin Gajdošík, Karl Landheer, Kelley M. Swanberg, Christoph Juchem
Software Mentions: 4
Published: almost 4 years ago

10.1093/database/bau100

DEOP: a database on osmoprotectants and associated pathways
Cited by: 27
Author(s): Salim Bougouffa, Aleksandar Radovanović, Magbubah Essack, Vladimir B. Bajic
Software Mentions: 3
Published: almost 11 years ago

10.1186/1471-2105-10-S6-S1

The 20th anniversary of EMBnet: 20 years of bioinformatics for the Life Sciences community
Cited by: 5
Author(s): Domenica D’Elia, Andreas Gisel, Nils-Einar Eriksson, Σοφία Κοσσίδα, Kimmo Mattila, Ľuboš Klučár, Erik Bongcam‐Rudloff
Software Mentions: 3
Published: over 15 years ago

10.1186/s12920-018-0465-4

Matrix association region/scaffold attachment region: the crucial player in defining the positions of chromosome breaks mediated by bile acid-induced apoptosis in nasopharyngeal epithelial cells
Cited by: 0
Author(s): Sang‐Nee Tan, Sai‐Peng Sim
Software Mentions: 3
Published: almost 6 years ago

10.1002/mrm.28630

FSL‐MRS: An end‐to‐end spectroscopy analysis package
Cited by: 37
Author(s): William T. Clarke, Charlotte J. Stagg, Saâd Jbabdi
Software Mentions: 3
Published: almost 4 years ago

10.1002/pro.3788

Facilities that make the PDB data collection more powerful
Cited by: 5
Author(s): Joanna Lange, Coos Baakman, Arthur M. A. Pistorius, Elmar Krieger, Rob Hooft, Robbie P. Joosten, Gert Vriend
Software Mentions: 3
Published: almost 5 years ago

10.1371/journal.pcbi.1005616

The eBioKit, a stand-alone educational platform for bioinformatics
Cited by: 10
Author(s): Rafael Hernández-de-Diego, Etienne P. de Villiers, Tomas Klingström, Hadrien Gourlé, Ana Conesa, Erik Bongcam‐Rudloff
Software Mentions: 2
Published: about 7 years ago

10.1186/1748-7188-4-1

Auto-validating von Neumann rejection sampling from small phylogenetic tree spaces
Cited by: 11
Author(s): Raazesh Sainudiin, A. York
Software Mentions: 2
Published: almost 16 years ago

10.3390/jimaging6110114

Ensemble of ERDTs for Spectral–Spatial Classification of Hyperspectral Images Using MRS Object-Guided Morphological Profiles
Cited by: 2
Author(s): Alim Samat, Erzhu Li, Sicong Liu, Miao Zhang, Wei Wang
Software Mentions: 2
Published: about 4 years ago

10.12688/f1000research.25306.2

An assessment of the autism neuroimaging literature for the prospects of re-executability
Cited by: 1
Author(s): Steven M. Hodge, Christian Haselgrove, Leah Honor, David N. Kennedy, Jean A. Frazier
Software Mentions: 2
Published: over 3 years ago