Ecosyste.ms: Papers

An open API service providing mapping between scientific papers and software projects that are mentioned in them.
All mentions data is based on the CZI Software Mentions dataset.

Papers: 10.1186/1471-2105-12-467

https://doi.org/10.1186/1471-2105-12-467

Empirical comparison of cross-platform normalization methods for gene expression data

Cited by: 88
Author(s): Jason R. Rudy, Faramarz Valafar
Published: almost 13 years ago

Software Mentions 8

bioconductor: affy
Methods for Affymetrix Oligonucleotide Arrays
Papers that mentioned: 989
bioconductor: GEOquery
Get data from NCBI Gene Expression Omnibus (GEO)
Papers that mentioned: 328
bioconductor: limma
Linear Models for Microarray Data
Papers that mentioned: 7,776
bioconductor: preprocessCore
A collection of pre-processing functions
Papers that mentioned: 146
bioconductor: qvalue
Q-value estimation for false discovery rate control
Papers that mentioned: 248
cran: caTools
Tools: Moving Window Statistics, GIF, Base64, ROC AUC, etc
Papers that mentioned: 52
cran: MRS
Multi-Resolution Scanning for Cross-Sample Differences
Papers that mentioned: 13
pypi: MRS
MRS analysis software
Papers that mentioned: 13