Ecosyste.ms: Papers

An open API service providing mapping between scientific papers and software projects that are mentioned in them.
All mentions data is based on the CZI Software Mentions dataset.

Projects: bioconductor: RnaSeqSampleSize

https://packages.ecosyste.ms/registries/bioconductor.org/packages/RnaSeqSampleSize

RnaSeqSampleSize
1 version
Latest release: 10 months ago
15,301 downloads total

Papers Mentioning RnaSeqSampleSize 13

10.1186/s12859-018-2296-x

Reproducible bioinformatics project: a community for reproducible bioinformatics analysis pipelines
Cited by: 47
Author(s): Neha Kulkarni, Luca Alessandrì, Riccardo Panero, Maddalena Arigoni, Martina Olivero, Giulio Ferrero, Francesca Cordero, Marco Beccuti, Raffaele Calogero
Software Mentions: 10
Published: almost 6 years ago

10.1186/s12859-016-0994-9

Sample size calculation while controlling false discovery rate for differential expression analysis with RNA-sequencing experiments
Cited by: 79
Author(s): Ran Bi, Peng Liu
Software Mentions: 9
Published: over 8 years ago

10.1186/s13073-020-00788-5

Wnt-regulated lncRNA discovery enhanced by in vivo identification and CRISPRi functional validation
Cited by: 10
Author(s): Shi Yang Liu, Nathan Harmston, Trudy Lee Glaser, Yunka Wong, Zheng Zhong, Babita Madan, David M. Virshup, Enrico Petretto
Software Mentions: 7
Published: almost 4 years ago

10.1038/s41598-019-44962-1

The human tubal lavage proteome reveals biological processes that may govern the pathology of hydrosalpinx
Cited by: 8
Author(s): Elizabeth Yohannes, Avedis Kazanjian, Morgan E. Lindsay, Dennis T. Fujii, Nicholas Ieronimakis, Gregory E. Chow, Ronald D. Beesley, Ryan J. Heitmann, Richard O. Burney
Software Mentions: 5
Published: about 5 years ago

10.1016/j.ebiom.2021.103538

Airway microbial communities, smoking and asthma in a general population sample
Cited by: 21
Author(s): Elena Turek, Michael J. Cox, Michael Hunter, Jennie Hui, Phillip James, Saffron A.G. Willis‐Owen, Leah Cuthbertson, Alan James, A.W. Musk, Miriam F. Moffatt, William Cookson
Software Mentions: 5
Published: almost 3 years ago

10.1186/s12864-019-5625-1

Integrated analysis of lncRNA and mRNA repertoires in Marek’s disease infected spleens identifies genes relevant to resistance
Cited by: 21
Author(s): Zhen You, Qinghe Zhang, Changjun Liu, Jiuzhou Song, Ning Yang, Ling Lian
Software Mentions: 4
Published: over 5 years ago

10.1186/s12859-018-2191-5

RnaSeqSampleSize: real data based sample size estimation for RNA sequencing
Cited by: 54
Author(s): Shilin Zhao, Chung I. Li, Yan Guo, Quanhu Sheng, Yu Shyr
Software Mentions: 4
Published: about 6 years ago

10.1186/s12859-017-1648-2

Power analysis for RNA-Seq differential expression studies
Cited by: 27
Author(s): Lianbo Yu, Soledad Fernández, Guy Brock
Software Mentions: 4
Published: about 7 years ago

10.1016/j.isci.2021.102751

The effects of aging on molecular modulators of human embryo implantation
Cited by: 6
Author(s): Panagiotis Ntostis, Grace Swanson, Georgia Kokkali, David Iles, John Huntriss, Agni Pantou, Maria Tzetis, Konstantinos Pantos, Helen M. Picton, Stephen A. Krawetz, D. H. Miller
Software Mentions: 4
Published: about 3 years ago

10.1186/s12864-020-07050-7

RNA-seq analysis of galaninergic neurons from ventrolateral preoptic nucleus identifies expression changes between sleep and wake
Cited by: 2
Author(s): Xiaofeng Guo, Xiaoling Gao, Brendan T. Keenan, Jane M. Zhu, Dimitra Sarantopoulou, Jie Liu, Raymond J. Galante, Gregory R. Grant, Allan I. Pack
Software Mentions: 3
Published: almost 4 years ago

10.18632/oncotarget.9555

Transcriptome sequencing identified hub genes for hepatocellular carcinoma by weighted-gene co-expression analysis
Cited by: 17
Author(s): Qi Pan, Xianli Long, Liting Song, Dachun Zhao, Xiaoyuan Li, Dewei Li, Min Li, Jinxue Zhou, Xia Tang, Hong Ren, Keyue Ding
Software Mentions: 3
Published: about 8 years ago

10.3390/nu11112584

Combined Omics Reveals That Disruption of the Selenocysteine Lyase Gene Affects Amino Acid Pathways in Mice
Cited by: 6
Author(s): Lucia A. Seale, Vedbar S. Khadka, Mark Menor, Guoxiang Xie, Lígia Moriguchi Watanabe, Alexandru R. Sasuclark, Kyrillos Guirguis, Herena Y. Ha, Ann C. Hashimoto, Karolina Peplowska, Maarit Tiirikainen, Jia Wang, Marla J. Berry, Youping Deng
Software Mentions: 2
Published: almost 5 years ago

10.1186/s12863-021-00980-5

Characterization and comparative analysis of transcriptional profiles of porcine colostrum and mature milk at different parities
Cited by: 3
Author(s): Brittney N Keel, A. K. Lindholm‐Perry, W. T. Oliver, John W. Wells, S. A. Jones, Lea A. Rempel
Software Mentions: 2
Published: almost 3 years ago