Ecosyste.ms: Papers

An open API service providing mapping between scientific papers and software projects that are mentioned in them.
All mentions data is based on the CZI Software Mentions dataset.

Papers: 10.1186/s12859-018-2296-x

https://doi.org/10.1186/s12859-018-2296-x

Reproducible bioinformatics project: a community for reproducible bioinformatics analysis pipelines

Cited by: 47
Author(s): Neha Kulkarni, Luca Alessandrì, Riccardo Panero, Maddalena Arigoni, Martina Olivero, Giulio Ferrero, Francesca Cordero, Marco Beccuti, Raffaele Calogero
Published: about 6 years ago

Software Mentions 10

bioconductor: RnaSeqSampleSize
RnaSeqSampleSize
Papers that mentioned: 13
cran: Platypus
Single-Cell Immune Repertoire and Gene Expression Analysis
Papers that mentioned: 218
cran: STAR
Spike Train Analysis with R
Papers that mentioned: 5,759
pypi: docker
A Python library for the Docker Engine API.
Papers that mentioned: 39
pypi: linux

Papers that mentioned: 450
pypi: pca
pca: A Python Package for Principal Component Analysis.
Papers that mentioned: 60
pypi: picard
The next generation MusicBrainz tagger
Papers that mentioned: 243
pypi: Platypus
A minimal language
Papers that mentioned: 218
pypi: snakemake
Workflow management system to create reproducible and scalable data analyses
Papers that mentioned: 45
pypi: tools
Set of tools for web scraping projects
Papers that mentioned: 118