Ecosyste.ms: Papers

An open API service providing mapping between scientific papers and software projects that are mentioned in them.
All mentions data is based on the CZI Software Mentions dataset.

Projects: bioconductor: SpidermiR

https://packages.ecosyste.ms/registries/bioconductor.org/packages/SpidermiR

SpidermiR: An R/Bioconductor package for integrative network analysis with miRNA data
1 version
Latest release: about 1 year ago
1 dependent package
13,972 downloads total

Papers Mentioning SpidermiR 13

10.1186/s12864-017-4423-x

Integration of multiple networks and pathways identifies cancer driver genes in pan-cancer analysis
Cited by: 31
Author(s): Claudia Cava, Gloria Bertoli, Antonio Colaprico, Catharina Olsen, Gianluca Bontempi, Isabella Castiglioni
Software Mentions: 12
Published: almost 7 years ago

10.3390/cancers12030692

Hypoxia-Induced Adaptations of miRNomes and Proteomes in Melanoma Cells and Their Secreted Extracellular Vesicles
Cited by: 29
Author(s): Geoffroy Walbrecq, Odile Lecha, Anthoula Gaigneaux, Miriam Rebecca Fougeras, Demetra Philippidou, Christiane Margue, Miléne Tetsi Nomigni, François Bernardin, Gunnar Dittmar, Iris Behrmann, Stephanie Kreis
Software Mentions: 11
Published: over 4 years ago

10.3390/e23020225

Patient-Specific Network for Personalized Breast Cancer Therapy with Multi-Omics Data
Cited by: 5
Author(s): Claudia Cava, Soudabeh Sabetian, Isabella Castiglioni
Software Mentions: 3
Published: almost 4 years ago

10.3390/genes9090458

miRmapper: A Tool for Interpretation of miRNA–mRNA Interaction Networks
Cited by: 21
Author(s): Willian A. da Silveira, Ludivine Renaud, Jonathan Simpson, W. Bailey Glen, E. Starr Hazard, Dongjun Chung, Gary Hardiman
Software Mentions: 3
Published: about 6 years ago

10.1186/s40360-020-00444-z

A protein interaction map identifies existing drugs targeting SARS-CoV-2
Cited by: 16
Author(s): Claudia Cava, Gloria Bertoli, Isabella Castiglioni
Software Mentions: 3
Published: about 4 years ago

10.1038/s41598-021-86230-1

Ionizing radiation exposure of stem cell-derived chondrocytes affects their gene and microRNA expression profiles and cytokine production
Cited by: 2
Author(s): Ewelina Stelcer, Katarzyna Kulcenty, Marcin Ruciński, Marta Kruszyna-Mochalska, A. Skrobała, Agnieszka Sobecka, Karol Jopek, Wiktoria Suchorska
Software Mentions: 3
Published: over 3 years ago

10.3390/ijms18020274

SpidermiR: An R/Bioconductor Package for Integrative Analysis with miRNA Data
Cited by: 45
Author(s): Claudia Cava, Antonio Colaprico, Gloria Bertoli, Alex Graudenzi, Tiago C. Silva, Catharina Olsen, Houtan Noushmehr, Gianluca Bontempi, Giancarlo Mauri, Isabella Castiglioni
Software Mentions: 3
Published: almost 8 years ago

10.3390/ijms20184371

The Role of MicroRNAs in Early Chondrogenesis of Human Induced Pluripotent Stem Cells (hiPSCs)
Cited by: 19
Author(s): Ewelina Stelcer, Katarzyna Kulcenty, Marcin Ruciński, Karol Jopek, Magdalena Richter, Tomasz Trzeciak, Wiktoria Maria Suchorska
Software Mentions: 2
Published: about 5 years ago

10.3390/ijms21072619

The Significance of MicroRNAs Expression in Regulation of Extracellular Matrix and Other Drug Resistant Genes in Drug Resistant Ovarian Cancer Cell Lines
Cited by: 20
Author(s): Dominika Kaźmierczak, Karol Jopek, Karolina Sterzyńska, Barbara Ginter-Matuszewska, Michał Nowicki, Marcin Ruciński, Radosław Januchowski
Software Mentions: 2
Published: over 4 years ago

10.3390/ijms20153651

MicroRNA Profiling During Neural Differentiation of Induced Pluripotent Stem Cells
Cited by: 21
Author(s): Katarzyna Kulcenty, Joanna Wróblewska, Marcin Ruciński, Emilia Kozłowska, Karol Jopek, Wiktoria Maria Suchorska
Software Mentions: 2
Published: over 5 years ago

10.3389/fonc.2019.00959

Profiling of tRNA Halves and YRNA Fragments in Serum and Tissue From Oral Squamous Cell Carcinoma Patients Identify Key Role of 5′ tRNA-Val-CAC-2-1 Half
Cited by: 17
Author(s): Joseph M. Dhahbi, Yury O. Nunez Lopez, Augusto Schneider, Berta Victoria, Tatiana D. Saccon, Krish Bharat, Thaddeus S. McClatchey, Hani Atamna, Wojciech Ścierski, Paweł Golusiński, Wojciech Golusiński, Michał M. Masternak
Software Mentions: 2
Published: about 5 years ago

10.3390/v12040404

In Silico Discovery of Candidate Drugs against Covid-19
Cited by: 146
Author(s): Claudia Cava, Gloria Bertoli, Isabella Castiglioni
Software Mentions: 2
Published: over 4 years ago

10.3390/ijms19041084

Radiation-Induced Gene Expression Changes in High and Low Grade Breast Cancer Cell Types
Cited by: 24
Author(s): Valentina Bravatà, Claudia Cava, Luigi Minafra, Francesco Paolo Cammarata, G. Russo, Maria Carla Gilardi, Isabella Castiglioni, Giusi Irma Forte
Software Mentions: 1
Published: over 6 years ago