Ecosyste.ms: Papers

An open API service providing mapping between scientific papers and software projects that are mentioned in them.
All mentions data is based on the CZI Software Mentions dataset.

Projects: pypi: Bambino

https://packages.ecosyste.ms/registries/pypi.org/packages/Bambino

Bambino
1 version
Latest release: about 1 year ago

Papers Mentioning Bambino 13

Genomic profiling is predictive of response to cisplatin treatment but not to PI3K inhibition in bladder cancer patient-derived xenografts
Cited by: 29
Author(s): Lei Wei, Sreenivasulu Chintala, Eric Ciamporcero, Swathi Ramakrishnan, May Elbanna, Jianmin Wang, Qiang Hu, Sean T. Glenn, Mitsuko Murakami, Lu Liu, Eduardo Cortes Gomez, Yuchen Sun, Jacob Conroy, Kiersten Marie Miles, Malathi Kullappan, Sudha Ramaiah, Anand Anbarasu, Anna Woloszynska‐Read, Candace S. Johnson, Jeffrey M. Conroy, Song Liu, Carl Morrison, Роберто Пили
Software Mentions: 5
Published: about 8 years ago

10.18632/oncotarget.9093

Collecting duct carcinoma of the kidney is associated withCDKN2Adeletion andSLCfamily gene up-regulation
Cited by: 44
Author(s): Jianmin Wang, Antonios Papanicolau‐Sengos, Sreenivasulu Chintala, Lei Wei, Biao Liu, Qiang Hu, Kiersten Marie Miles, Jeffrey M. Conroy, Sean T. Glenn, Manuela Costantini, Cristina Magi‐Galluzzi, Sabina Signoretti, Toni K. Choueiri, Michele Gallucci, Steno Sentinelli, Vito Michele Fazio, Maria Luana Poeta, Song Liu, Carl Morrison, Роберто Пили
Software Mentions: 4
Published: over 8 years ago

10.1186/1471-2164-13-131

VESPA: software to facilitate genomic annotation of prokaryotic organisms through integration of proteomic and transcriptomic data
Cited by: 31
Author(s): Elena S. Peterson, Lee Ann McCue, Alexandra C. Schrimpe‐Rutledge, Jeffrey L. Jensen, Hyunjoo Walker, Markus A. Kobold, Samantha R Webb, Samuel H. Payne, Charles Ansong, Joshua N. Adkins, W. Roger Cannon, Bobbie-Jo M. Webb-Robertson
Software Mentions: 4
Published: over 12 years ago

10.18632/oncotarget.19642

Exome sequencing analysis of murine medulloblastoma models identifies WDR11 as a potential tumor suppressor in Group 3 tumors
Cited by: 8
Author(s): Lei Wei, Brian L. Murphy, Gang Wu, Matthew Parker, John Easton, Richard J. Gilbertson, Jinghui Zhang, Martine F. Roussel
Software Mentions: 4
Published: over 7 years ago

10.1186/s40478-020-00930-9

Clinical, imaging, and molecular analysis of pediatric pontine tumors lacking characteristic imaging features of DIPG
Cited by: 30
Author(s): Jason Chiang, Alexander K. Diaz, Lydia Makepeace, Xiaoyü Li, Yuanyuan Han, Yimei Li, Paul Klimo, Frederick A. Boop, Suzanne J. Baker, Amar Gajjar, Thomas E. Merchant, David W. Ellison, Alberto Broniscer, Zoltán Patay, Christopher L. Tinkle
Software Mentions: 3
Published: over 4 years ago

10.1186/gb-2012-13-12-r113

Assessing telomeric DNA content in pediatric cancers using whole-genome sequencing data
Cited by: 29
Author(s): Matthew Parker, Xiang Chen, Armita Bahrami, James Dalton, Michael Rusch, Gang Wu, John Easton, Nai Kong V. Cheung, Michael A. Dyer, Elaine R. Mardis, Richard K. Wilson, Charles G. Mullighan, Richard J. Gilbertson, Suzanne J. Baker, Gerard P. Zambetti, David W. Ellison, James R. Downing, Jinghui Zhang
Software Mentions: 3
Published: almost 13 years ago

10.1371/journal.pone.0030080

Customisation of the Exome Data Analysis Pipeline Using a Combinatorial Approach
Cited by: 21
Author(s): Swetansu Pattnaik, Srividya Vaidyanathan, Durgad G. Pooja, S. A. Deepak, Binay Panda
Software Mentions: 2
Published: almost 13 years ago

10.1038/s41598-019-45938-x

VCF2CNA: A tool for efficiently detecting copy-number alterations in VCF genotype data and tumor purity
Cited by: 5
Author(s): Daniel K. Putnam, Xiaotu Ma, Stephen V. Rice, Yu Liu, Scott Newman, Jinghui Zhang, Xiang Chen
Software Mentions: 2
Published: over 5 years ago

10.3892/or.2014.3579

Human cancer databases (Review)
Cited by: 63
Author(s): Athanasia Pavlopoulou, Demetrios Α. Spandidos, Ioannis Michalopoulos
Software Mentions: 2
Published: about 10 years ago

10.1371/journal.pone.0151664

Evaluation of Nine Somatic Variant Callers for Detection of Somatic Mutations in Exome and Targeted Deep Sequencing Data
Cited by: 136
Author(s): Anne Bruun Krøigård, Mads Thomassen, Anne‐Vibeke Lænkholm, Torben A. Kruse, Martin Jakob Larsen
Software Mentions: 2
Published: over 8 years ago

10.3389/fonc.2021.672597

DIVIS: Integrated and Customizable Pipeline for Cancer Genome Sequencing Analysis and Interpretation
Cited by: 0
Author(s): Xiaoyu He, Yu Zhang, Dan-Yang Yuan, Xinyin Han, Jiayin He, Xiaohong Duan, Siyao Liu, Xintong Wang, Beifang Niu
Software Mentions: 2
Published: over 3 years ago

10.1002/path.4643

Adenoma development in familial adenomatous polyposis and <scp>MUTYH</scp> ‐associated polyposis: somatic landscape and driver genes
Cited by: 38
Author(s): Muhammad Usman Rashid, Andrej Fischer, Catherine H. Wilson, Jessamy Tiffen, Alistair G. Rust, Philip Stevens, Shelley Idziaszczyk, Julie Maynard, Gareth Williams, Ville Mustonen, Julian R. Sampson, David J. Adams
Software Mentions: 1
Published: about 9 years ago

10.1093/bioinformatics/btt371

Cake: a bioinformatics pipeline for the integrated analysis of somatic variants in cancer genomes
Cited by: 28
Author(s): Mamunur Rashid, Carla Daniela Robles-Espinoza, Alistair G. Rust, David J. Adams
Software Mentions: 1
Published: over 11 years ago