Ecosyste.ms: Papers

10.1371/journal.pone.0095224

Two-Stage, In Silico Deconvolution of the Lymphocyte Compartment of the Peripheral Whole Blood Transcriptome in the Context of Acute Kidney Allograft Rejection
Cited by: 18
Author(s): Casey P. Shannon, Robert Balshaw, Raymond T. Ng, J. Wilson-McManus, Paul Keown, Robert McMaster, Bruce M. McManus, David Landsberg, Nicole M. Isbel, Greg Knoll, Scott J. Tebbutt
Software Mentions: 9
Published: over 10 years ago

10.1038/srep32976

Disease-specific classification using deconvoluted whole blood gene expression
Cited by: 17
Author(s): Li Wang, William K. Oh, Jun Zhu
Software Mentions: 8
Published: over 8 years ago

10.1186/s12859-021-03982-3

Nonlinear ridge regression improves cell-type-specific differential expression analysis
Cited by: 4
Author(s): Fumihiko Takeuchi, Norihiro Kato
Software Mentions: 6
Published: almost 4 years ago

10.18632/oncotarget.22169

Immunological landscape of consensus clusters in colorectal cancer
Cited by: 49
Author(s): Paweł Karpiński, Joanna Rossowska, Maria M. Sasiadek
Software Mentions: 5
Published: about 7 years ago

10.1371/journal.pcbi.1007510

CDSeq: A novel complete deconvolution method for dissecting heterogeneous samples using gene expression data
Cited by: 39
Author(s): Kai Kang, Qian Meng, Igor Shats, David M. Umbach, Melissa Li, Yuanyuan Li, Xiaoling Li, Leping Li
Software Mentions: 4
Published: about 5 years ago

10.1186/1471-2105-14-204

Deconvolution of gene expression from cell populations across the C. eleganslineage
Cited by: 2
Author(s): Joshua T. Burdick, John I. Murray
Software Mentions: 4
Published: over 11 years ago

10.1186/s13059-014-0526-8

Combined image and genomic analysis of high-grade serous ovarian cancer reveals PTEN loss as a common driver event and prognostic classifier
Cited by: 92
Author(s): Filipe Correia Martins, Inês de Santiago, Anne Trinh, Xian Jian, Anne Guo, Karen Sayal, Mercedes Jimenez-Liñan, Suha Deen, Kristy Driver, Marie Mack, Jennifer Aslop, Paul D.P. Pharoah, Florian Markowetz, James D. Brenton
Software Mentions: 3
Published: about 10 years ago

10.1186/s12859-016-1226-z

Improving sensitivity of linear regression-based cell type-specific differential expression deconvolution with per-gene vs. global significance threshold
Cited by: 10
Author(s): Edmund Glass, Mikhail G. Dozmorov
Software Mentions: 3
Published: over 8 years ago

10.1371/journal.pone.0197911

Deconvolution of expression microarray data reveals 131I-induced responses otherwise undetected in thyroid tissue
Cited by: 5
Author(s): Britta Langen, Nils Rudqvist, Johan Spetz, Khalil Helou, Eva Forssell-Aronsson
Software Mentions: 2
Published: over 6 years ago

10.1186/1741-7015-9-130

A diagnostic algorithm combining clinical and molecular data distinguishes Kawasaki disease from other febrile illnesses
Cited by: 41
Author(s): Xuefeng B. Ling, Kenneth Lau, John T. Kanegaye, Pan Zheng, Syd S. Peng, Jun Ji, Gigi Liu, Yuichiro Sato, Tom Yu, John C. Whitin, James Schilling, Jane C. Burns, Harvey J. Cohen
Software Mentions: 2
Published: about 13 years ago

10.1038/srep23002

Effects of Systemically Administered Hydrocortisone on the Human Immunome
Cited by: 113
Author(s): Matthew J. Olnes, Yuri Kotliarov, Angélique Biancotto, Foo Cheung, Jinguo Chen, Rongye Shi, Huizhi Zhou, Ena Wang, John S. Tsang, Robert B. Nussenblatt
Software Mentions: 2
Published: almost 9 years ago

10.1186/1471-2164-13-655

Decreased miR-192 expression in peripheral blood of asthmatic individuals undergoing an allergen inhalation challenge
Cited by: 45
Author(s): Masatsugu Yamamoto, Amrit Singh, Jian Ruan, Gail M. Gauvreau, Paul M. O'Byrne, Christopher Carlsten, J. Mark FitzGerald, Louis‐Philippe Boulet, Scott J. Tebbutt
Software Mentions: 1
Published: about 12 years ago

10.3390/nu8050277

A Mixed Flavonoid-Fish Oil Supplement Induces Immune-Enhancing and Anti-Inflammatory Transcriptomic Changes in Adult Obese and Overweight Women—A Randomized Controlled Trial
Cited by: 29
Author(s): Lynn Cialdella‐Kam, David C. Nieman, Amy M. Knab, R. Andrew Shanely, Mary Pat Meaney, Fuxia Jin, Sha Wang, Sujoy Ghosh
Software Mentions: 1
Published: over 8 years ago