Packages with Software Mentions in Scientific Papers

pypi: POET

Calculate the orbital evolution of a planet-star system.
Papers that mentioned: 14

Very Likely Science (65)

pypi: deal

**Deal** is a Python library for [design by contract][wiki] (DbC) programming.
Papers that mentioned: 14

Very Likely Science (100)

cran: precrec

Calculate Accurate Precision-Recall and ROC (Receiver Operator Characteristics) Curves
Papers that mentioned: 14

Very Likely Science (100)

pypi: dammit

dammit!
Papers that mentioned: 14

Very Likely Science (100)

bioconductor: ViSEAGO

ViSEAGO: a Bioconductor package for clustering biological functions using Gene Ontology and semantic similarity
Papers that mentioned: 14

Very Likely Science (90)

cran: calibrate

Calibration of Scatterplot and Biplot Axes
Papers that mentioned: 14

Likely Science (58)

cran: ggsn

North Symbols and Scale Bars for Maps Created with 'ggplot2' or 'ggmap'
Papers that mentioned: 14

Very Likely Science (75)

bioconductor: puma

Propagating Uncertainty in Microarray Analysis(including Affymetrix tranditional 3' arrays and exon arrays and Human Transcriptome Array 2.0)
Papers that mentioned: 14

Very Likely Science (100)

cran: LIM

Linear Inverse Model Examples and Solution Methods
Papers that mentioned: 14

Very Likely Science (75)

pypi: scikit-posthocs

Statistical post-hoc analysis and outlier detection algorithms
Papers that mentioned: 14

Very Likely Science (100)

cran: deal

Learning Bayesian Networks with Mixed Variables
Papers that mentioned: 14

Very Likely Science (85)

bioconductor: Repitools

Epigenomic tools
Papers that mentioned: 14

Very Likely Science (90)

pypi: MobileElementFinder

Mobile Genetic Element prediction
Papers that mentioned: 14

Very Likely Science (75)

cran: GiRaF

Gibbs Random Fields Analysis
Papers that mentioned: 14

Very Likely Science (85)

cran: ChemoSpec

Exploratory Chemometrics for Spectroscopy
Papers that mentioned: 14

Very Likely Science (100)

cran: GLMMadaptive

Generalized Linear Mixed Models using Adaptive Gaussian Quadrature
Papers that mentioned: 14

Very Likely Science (81)

pypi: Ethos

Papers that mentioned: 14

Very Likely Science (65)

cran: camtrapR

Camera Trap Data Management and Preparation of Occupancy and Spatial Capture-Recapture Analyses
Papers that mentioned: 14

Very Likely Science (87)

bioconductor: RBM

RBM: a R package for microarray and RNA-Seq data analysis
Papers that mentioned: 14

Very Likely Science (100)

cran: cooccur

Probabilistic Species Co-Occurrence Analysis in R
Papers that mentioned: 14

Very Likely Science (85)

cran: RStoolbox

Tools for Remote Sensing Data Analysis
Papers that mentioned: 14

Very Likely Science (85)

cran: ff

Memory-Efficient Storage of Large Data on Disk and Fast Access Functions
Papers that mentioned: 14

Very Likely Science (75)

pypi: calibrate

Interpolate using a calibration curve
Papers that mentioned: 14

Very Likely Science (70)

pypi: ff

A kit for files finding
Papers that mentioned: 14

Very Likely Science (65)

cran: DCluster

Functions for the Detection of Spatial Clusters of Diseases
Papers that mentioned: 14

Very Likely Science (75)

cran: DDD

Diversity-Dependent Diversification
Papers that mentioned: 14

Very Likely Science (75)

cran: yaml

Methods to Convert R Data to YAML and Back
Papers that mentioned: 14

Very Likely Science (100)

A Python based computational framework for integrated computer aided design, curvilinear mesh generation and finite and boundary element methods for linear and nonlinear analysis of solids and coupled multiphysics problems
Papers that mentioned: 14

Very Likely Science (75)

pypi: me

me
Papers that mentioned: 14

Very Likely Science (65)

cran: matR

Metagenomics Analysis Tools
Papers that mentioned: 14

Very Likely Science (85)

cran: polymapR

Linkage Analysis in Outcrossing Polyploids
Papers that mentioned: 14

Very Likely Science (85)

pypi: reg

Clever dispatch
Papers that mentioned: 14

Very Likely Science (65)

pypi: Party

Lightweight Python client to the Artifactory API.
Papers that mentioned: 14

Very Likely Science (65)

pypi: yhat

Python client for Yhat (http://yhat.com/)
Papers that mentioned: 14

Very Likely Science (65)

pypi: vtk

VTK is an open-source toolkit for 3D computer graphics, image processing, and visualization
Papers that mentioned: 14

Very Likely Science (90)

pypi: MDP

MDP is a Python library for building complex data processing software by combining widely used machine learning algorithms into pipelines and networks.
Papers that mentioned: 14

Very Likely Science (90)

pypi: Quixote

A small and flexible Python Web application framework
Papers that mentioned: 14

Very Likely Science (65)

pypi: pmx

Python Toolbox structure file editing and writing simulation setup/analysis tools
Papers that mentioned: 14

Very Likely Science (100)

pypi: neo4j

Neo4j Bolt driver for Python
Papers that mentioned: 14

Very Likely Science (65)

pypi: mri

Papers that mentioned: 14

Unlikely Science (0)

pypi: molecular

A toolkit for molecular dynamics simulations
Papers that mentioned: 14

Very Likely Science (75)

pypi: microsoft

This package name is reserved by Microsoft Corporation
Papers that mentioned: 14

Unlikely Science (5)

pypi: pylab

Papers that mentioned: 14

Unlikely Science (0)

cran: rfishbase

R Interface to 'FishBase'
Papers that mentioned: 14

Very Likely Science (100)

cran: ETAS

Modeling Earthquake Data Using 'ETAS' Model
Papers that mentioned: 14

Very Likely Science (100)

cran: roxygen2

In-Line Documentation for R
Papers that mentioned: 14

Very Likely Science (100)

pypi: evaluation

A tool for compare the difference of the files.
Papers that mentioned: 14

Very Likely Science (65)

pypi: local

To browse local files.
Papers that mentioned: 14

Very Likely Science (65)

bioconductor: GlobalAncova

Global test for groups of variables via model comparisons
Papers that mentioned: 14

Very Likely Science (90)

pypi: gs

A minimalistic Google Storage client
Papers that mentioned: 14

Very Likely Science (65)

cran: R.matlab

Read and Write MAT Files and Call MATLAB from Within R
Papers that mentioned: 14

Very Likely Science (75)

cran: pcnetmeta

Patient-Centered Network Meta-Analysis
Papers that mentioned: 14

Very Likely Science (93)

pypi: gseapy

Gene Set Enrichment Analysis in Python
Papers that mentioned: 14

Very Likely Science (100)

pypi: processing

Package for using processes which mimics the threading module
Papers that mentioned: 14

Likely Science (40)

pypi: dotter

Dotter is a graphviz wrapper for Python 2 and 3
Papers that mentioned: 14

Very Likely Science (65)

cran: vars

VAR Modelling
Papers that mentioned: 14

Very Likely Science (85)

pypi: iml

Interpretable Machine Learning (iML) package. Explain the predictions of any model.
Papers that mentioned: 14

Very Likely Science (100)

cran: SDAR

Stratigraphic Data Analysis
Papers that mentioned: 14

Very Likely Science (93)

cran: sra

Selection Response Analysis
Papers that mentioned: 14

Very Likely Science (85)

pypi: EukRep

Classification of Eukaryotic and Prokaryotic sequences from metagenomic datasets
Papers that mentioned: 14

Very Likely Science (100)

cran: predictmeans

Predicted Means for Linear and Semiparametric Models
Papers that mentioned: 14

Very Likely Science (80)

pypi: nl

A python library that provides a production system with an API modelled on the natural language
Papers that mentioned: 14

Very Likely Science (80)

cran: flow

View and Browse Code Using Flow Diagrams
Papers that mentioned: 14

Very Likely Science (79)

pypi: exp

Python tool do design and run experiments with global optimisation and grid search
Papers that mentioned: 14

Very Likely Science (95)

bioconductor: SpidermiR

SpidermiR: An R/Bioconductor package for integrative network analysis with miRNA data
Papers that mentioned: 13

Very Likely Science (100)

cran: R.utils

Various Programming Utilities
Papers that mentioned: 13

Very Likely Science (75)

pypi: leaflet

Dead simple I2P SAM library
Papers that mentioned: 13

Very Likely Science (90)

cran: comparison

Multivariate Likelihood Ratio Calculation and Evaluation
Papers that mentioned: 13

Very Likely Science (88)

pypi: MADAM

Digital asset management library
Papers that mentioned: 13

Very Likely Science (80)

cran: FSM

Finite Selection Model
Papers that mentioned: 13

Very Likely Science (83)

pypi: PAME

GUI for modeling nanoparticles on optical fiber with mixing/shell-filling models
Papers that mentioned: 13

Very Likely Science (90)

pypi: proc

Simple interface to Linux process information
Papers that mentioned: 13

Very Likely Science (65)

cran: omics

'–omics' Data Analysis Toolbox
Papers that mentioned: 13

Very Likely Science (85)

pypi: DBN

Decentralized Bluetooth Network
Papers that mentioned: 13

Very Likely Science (75)

pypi: sensitivity

Python Sensitivity Analysis - Gradient DataFrames and Hex-Bin Plots
Papers that mentioned: 13

Very Likely Science (75)

cran: PopGenKit

Papers that mentioned: 13

Unlikely Science (0)

pypi: cobweb

A scaffold for building and deploying powerful and robust webapps
Papers that mentioned: 13

Very Likely Science (65)

pypi: short

A simple short implementation for Python3
Papers that mentioned: 13

Very Likely Science (65)

pypi: Jupiter

Useful J-related stuff.
Papers that mentioned: 13

Very Likely Science (65)

cran: SpadeR

Species-Richness Prediction and Diversity Estimation with R
Papers that mentioned: 13

Very Likely Science (83)

pypi: hmmlearn

Hidden Markov Models in Python with scikit-learn like API
Papers that mentioned: 13

Very Likely Science (100)

cran: pRF

Permutation Significance for Random Forests
Papers that mentioned: 13

Very Likely Science (83)

bioconductor: PathNet

An R package for pathway analysis using topological information
Papers that mentioned: 13

Very Likely Science (100)

cran: sirt

Supplementary Item Response Theory Models
Papers that mentioned: 13

Very Likely Science (83)

cran: JMI

Jackknife Mutual Information
Papers that mentioned: 13

Very Likely Science (83)

cran: TTR

Technical Trading Rules
Papers that mentioned: 13

Very Likely Science (75)

pypi: Bambino

Bambino
Papers that mentioned: 13

Very Likely Science (65)

pypi: umap-learn

Uniform Manifold Approximation and Projection
Papers that mentioned: 13

Very Likely Science (100)

cran: kml

K-Means for Longitudinal Data
Papers that mentioned: 13

Very Likely Science (75)

cran: IFP

Identifying Functional Polymorphisms
Papers that mentioned: 13

Very Likely Science (83)

cran: gsDesign

Group Sequential Design
Papers that mentioned: 13

Very Likely Science (99)

pypi: FINE

Framework for integrated energy systems assessment
Papers that mentioned: 13

Very Likely Science (80)

cran: MAPA

Multiple Aggregation Prediction Algorithm
Papers that mentioned: 13

Very Likely Science (85)

pypi: evo

Python package for the evaluation of odometry and SLAM
Papers that mentioned: 13

Very Likely Science (80)

cran: RGCCA

Regularized and Sparse Generalized Canonical Correlation Analysis for Multiblock Data
Papers that mentioned: 13

Very Likely Science (85)

cran: NetworkComparisonTest

Statistical Comparison of Two Networks Based on Several Invariance Measures
Papers that mentioned: 13

Very Likely Science (85)

cran: eggCounts

Hierarchical Modelling of Faecal Egg Counts
Papers that mentioned: 13

Very Likely Science (85)

pypi: metagen

Metadata.xml Generator for Ebuilds
Papers that mentioned: 13

Very Likely Science (65)

pypi: mimics

Small tool for deferring actions and operations on objects and classes
Papers that mentioned: 13

Very Likely Science (65)

cran: DTComPair

Comparison of Binary Diagnostic Tests in a Paired Study Design
Papers that mentioned: 13

Very Likely Science (75)