Ecosyste.ms: Papers
An open API service providing mapping between scientific papers and software projects that are mentioned in them.
All mentions data is based on the CZI Software Mentions dataset.
Projects: bioconductor: ViSEAGO
https://packages.ecosyste.ms/registries/bioconductor.org/packages/ViSEAGO
ViSEAGO: a Bioconductor package for clustering biological functions using Gene Ontology and semantic similarity
1 version
Latest release: about 1 year ago
10,130 downloads total
Papers Mentioning ViSEAGO 14
10.3390/genes11060677
Predicting Functions of Uncharacterized Human Proteins: From Canonical to ProteoformsCited by: 6
Author(s): Ekaterina V. Poverennaya, Olga I. Kiseleva, Anastasia Romanova, Mikhail A. Pyatnitskiy
Software Mentions: 10
Published: over 4 years ago
10.1128/mSystems.00163-21
Oral Epithelial Cells Distinguish between <i>Candida</i> Species with High or Low Pathogenic Potential through MicroRNA RegulationCited by: 5
Author(s): Márton Horváth, Gábor Nagy, Nóra Zsindely, László Bodai, Péter Horváth, Csaba Vágvölgyi, Joshua D. Nosanchuk, Renáta Tóth, Attila Gácser
Software Mentions: 6
Published: over 3 years ago
10.3390/ani11092606
Jejunal Transcriptomic Profiling for Differences in Feed Conversion Ratio in Slow-Growing ChickensCited by: 2
Author(s): Panpradub Sinpru, Cindy Riou, Shin Kubota, Chotima Poompramun, Wittawat Molee, Amonrat Molee
Software Mentions: 5
Published: about 3 years ago
10.1007/s13353-020-00569-1
Differential expression of lung adenocarcinoma transcriptome with signature of tobacco exposureCited by: 11
Author(s): Raneem Y Hammouz, Joanna Kostanek, Aleksandra Dudzisz, Piotr J Witas, Magdalena Orzechowska, Andrzej K. Bednarek
Software Mentions: 5
Published: over 4 years ago
10.3389/fgene.2019.01207
Thermal Manipulation During Embryogenesis Impacts H3K4me3 and H3K27me3 Histone Marks in Chicken HypothalamusCited by: 26
Author(s): Sarah-Anne David, Anaïs Vitorino Carvalho, Coralie Gimonnet, Aurélien Brionne, Christelle Hennequet-Antier, Benoît Piégu, Sabine Crochet, Nathalie Couroussé, Thierry Bordeau, Yves Bigot, Anne Collin, Vincent Coustham
Software Mentions: 5
Published: almost 5 years ago
10.1523/JNEUROSCI.2979-20.2021
Changes in Presynaptic Gene Expression during Homeostatic Compensation at a Central SynapseCited by: 10
Author(s): Evan R. Harrell, Diogo Pimentel, Gero Miesenböck
Software Mentions: 4
Published: over 3 years ago
10.3389/fgene.2021.668448
Integrated Analysis of lncRNAs, mRNAs, and TFs to Identify Regulatory Networks Underlying MAP Infection in CattleCited by: 6
Author(s): Maryam Heidari, A. Pakdel, Mohammad Reza Bakhtiarizadeh, Fariba Dehghanian
Software Mentions: 4
Published: over 3 years ago
10.1186/s12864-020-07072-1
B chromosomes of multiple species have intense evolutionary dynamics and accumulated genes related to important biological processesCited by: 18
Author(s): Syed Farhan Ahmad, Maryam Jehangir, Adauto Lima Cardoso, Ivan Rodrigo Wolf, Vladimir Pavan Margarido, Diogo Cavalcanti Cabral-de-Mello, Rachel J. O’Neill, Guilherme Targino Valente, Cesar Martins
Software Mentions: 4
Published: about 4 years ago
10.3390/jpm11020064
Does Proteomic Mirror Reflect Clinical Characteristics of Obesity?Cited by: 2
Author(s): Olga I. Kiseleva, Viktoriia A. Arzumanian, Ekaterina V. Poverennaya, Mikhail A. Pyatnitskiy, Ekaterina V. Ilgisonis, Victor G. Zgoda, О А Плотникова, Khaider K. Sharafetdinov, А. В. Лисица, V A Tutelyan, D. B. Nikityuk, Alexander I. Archakov, Elena Ponomarenko
Software Mentions: 3
Published: almost 4 years ago
10.3389/fimmu.2021.660361
Transcriptome Signature of Vγ9Vδ2 T Cells Treated With Phosphoantigens and Notch Inhibitor Reveals Interplay Between TCR and Notch Signaling PathwaysCited by: 6
Author(s): Ayush Madhok, Sajad Ahmad Bhat, Chinna Susan Philip, Shalini Kashipathi Sureshbabu, Shubhada Chiplunkar, Sanjeev Galande
Software Mentions: 3
Published: about 3 years ago
10.1038/s41598-021-98454-2
Protein expression reveals a molecular sexual identity of avian primordial germ cells at pre-gonadal stagesCited by: 9
Author(s): Laura Soler, Sabine Alves, Aurélien Brionne, Aurore Jacques, Vanessa Guérin, Maëva Cherif--Feildel, Lucie Combes‐Soia, Sophie Fouchécourt, Aurore Thélie, Élisabeth Blesbois, Michael J. McGrew, Valérie Labas, Marina Govoroun
Software Mentions: 3
Published: about 3 years ago
10.1186/s13040-019-0204-1
ViSEAGO: a Bioconductor package for clustering biological functions using Gene Ontology and semantic similarityCited by: 83
Author(s): Aurélien Brionne, Amélie Juanchich, Christelle Hennequet-Antier
Software Mentions: 2
Published: over 5 years ago
10.1186/s12864-021-07832-7
Embryonic thermal manipulation impacts the postnatal transcriptome response of heat-challenged Japanese quailsCited by: 4
Author(s): Anaïs Vitorino Carvalho, Christelle Hennequet-Antier, Aurélien Brionne, Sabine Crochet, Justine Jimenez, Nathalie Couroussé, Anne Collin, Vincent Coustham
Software Mentions: 2
Published: over 3 years ago
10.3390/e23081031
A Transcriptome Community-and-Module Approach of the Human MesoconnectomeCited by: 4
Author(s): Omar Paredes, Jhonatan B. López, César Covantes-Osuna, Vladimir Ocegueda-Hernández, Rebeca Romo-Vázquez, J. Alejandro Morales
Software Mentions: 1
Published: about 3 years ago