Ecosyste.ms: Papers

An open API service providing mapping between scientific papers and software projects that are mentioned in them.
All mentions data is based on the CZI Software Mentions dataset.

Papers: 10.3390/genes11060677

https://doi.org/10.3390/genes11060677

Predicting Functions of Uncharacterized Human Proteins: From Canonical to Proteoforms

Cited by: 6
Author(s): Ekaterina V. Poverennaya, Olga I. Kiseleva, Anastasia Romanova, Mikhail A. Pyatnitskiy
Published: over 4 years ago

Software Mentions 10

bioconductor: BioPlex
Papers that mentioned: 84
bioconductor: ComplexHeatmap
Make Complex Heatmaps
Papers that mentioned: 565
bioconductor: COSNet
Cost Sensitive Network for node label prediction on graphs with highly unbalanced labelings
Papers that mentioned: 8
bioconductor: GOSemSim
GO-terms Semantic Similarity Measures
Papers that mentioned: 118
bioconductor: SMAD
Statistical Modelling of AP-MS Data (SMAD)
Papers that mentioned: 4
bioconductor: ViSEAGO
ViSEAGO: a Bioconductor package for clustering biological functions using Gene Ontology and semantic similarity
Papers that mentioned: 14
cran: graphlayouts
Additional Layout Algorithms for Network Visualizations
Papers that mentioned: 2
cran: igraph
Network Analysis and Visualization
Papers that mentioned: 1,555
cran: threejs
Interactive 3D Scatter Plots, Networks and Globes
Papers that mentioned: 7
pypi: igraph
High performance graph data structures and algorithms
Papers that mentioned: 1,555