Ecosyste.ms: Papers

10.3390/genes11060677

Predicting Functions of Uncharacterized Human Proteins: From Canonical to Proteoforms
Cited by: 6
Author(s): Ekaterina V. Poverennaya, Olga I. Kiseleva, Anastasia Romanova, Mikhail A. Pyatnitskiy
Software Mentions: 10
Published: over 4 years ago

10.3389/fcell.2019.00283

A Combined Mass Spectrometry and Data Integration Approach to Predict the Mitochondrial Poly(A) RNA Interacting Proteome
Cited by: 2
Author(s): Selma L van Esveld, Şirin Cansız-Arda, Fenna Hensen, Robin van der Lee, Martijn Huynen, Johannes N. Spelbrink
Software Mentions: 7
Published: about 5 years ago

10.1186/s12864-018-4876-6

The arrhythmogenic cardiomyopathy-specific coding and non-coding transcriptome in human cardiac stromal cells
Cited by: 14
Author(s): Johannes Michael Rainer, Viviana Meraviglia, Hagen Blankenburg, Chiara Piubelli, Peter P. Pramstaller, Adolfo Paolin, Elisa Cogliati, Giulio Pompilio, Elena Sommariva, Francisco S. Domingues, Alessandra Rossini
Software Mentions: 6
Published: over 6 years ago

10.1186/s12859-020-03821-x

A method for estimating coherence of molecular mechanisms in major human disease and traits
Cited by: 1
Author(s): Mikhail G. Dozmorov, Kellen Garrison Cresswell, Silviu‐Alin Bacanu, Carl F. Craver, Mark Reimers, Kenneth S. Kendler
Software Mentions: 5
Published: about 4 years ago

10.3389/fgene.2018.00670

The Importance of Biologic Knowledge and Gene Expression Context for Genomic Data Interpretation
Cited by: 5
Author(s): Michael T. Zimmermann
Software Mentions: 5
Published: about 6 years ago

10.15252/msb.20167490

Integration of over 9,000 mass spectrometry experiments builds a global map of human protein complexes
Cited by: 163
Author(s): Kevin Drew, Chanjae Lee, Ryan L. Huizar, Fan Tu, Blake Borgeson, Claire D. McWhite, Yun Ma, John B. Wallingford, Edward M. Marcotte
Software Mentions: 5
Published: over 7 years ago

10.12688/wellcomeopenres.15232.2

Genome-wide CRISPR screening identifies new regulators of glycoprotein secretion
Cited by: 2
Author(s): Stephanie Popa, Julien Villeneuve, Sarah E. Stewart, Esther Perez Garcia, Anna Petrunkina Harrison, Kévin Moreau
Software Mentions: 4
Published: almost 5 years ago

10.1038/srep37767

Measuring intratumor heterogeneity by network entropy using RNA-seq data
Cited by: 49
Author(s): Youngjun Park, Sangsoo Lim, Jin Wu Nam, Sun Kim
Software Mentions: 4
Published: about 8 years ago

10.1186/s12859-019-2800-y

Integrating data and knowledge to identify functional modules of genes: a multilayer approach
Cited by: 10
Author(s): Lifan Liang, Vicky Chen, Kunju Zhu, Xiao-Nan Fan, Xinghua Lu, Songjian Lu
Software Mentions: 4
Published: over 5 years ago

10.1371/journal.pmed.1002338

Prehospital immune responses and development of multiple organ dysfunction syndrome following traumatic injury: A prospective cohort study
Cited by: 89
Author(s): Jon Hazeldine, David N Naumann, Emma Toman, David Davies, Jonathan Bishop, Zhangjie Su, Peter Hampson, Robert J. Dinsdale, Nicholas Crombie, Niharika Arora Duggal, Paul Harrison, Antonio Belli, Janet M. Lord
Software Mentions: 4
Published: over 7 years ago

10.1371/journal.pgen.1007071

Profiling RNA-Seq at multiple resolutions markedly increases the number of causal eQTLs in autoimmune disease
Cited by: 20
Author(s): Christopher A. Odhams, Deborah S. Cunninghame Graham, Timothy J. Vyse
Software Mentions: 3
Published: about 7 years ago

10.3390/molecules25061396

Mass Spectrometry Advances and Perspectives for the Characterization of Emerging Adoptive Cell Therapies
Cited by: 10
Author(s): Camille Lombard‐Banek, John E. Schiel
Software Mentions: 3
Published: almost 5 years ago

10.1083/jcb.202106115

GOLPH3 and GOLPH3L are broad-spectrum COPI adaptors for sorting into intra-Golgi transport vesicles
Cited by: 24
Author(s): Lawrence G. Welch, Sew‐Yeu Peak‐Chew, Farida Begum, Tim J. Stevens, Sean Munro
Software Mentions: 3
Published: over 3 years ago

10.1371/journal.pone.0075670

Multiplex Microsphere Immunoassays for the Detection of IgM and IgG to Arboviral Diseases
Cited by: 40
Author(s): Alison Jane Basile, Kalanthe Horiuchi, Amanda J. Panella, Janeen Laven, Olga Kosoy, Robert S. Lanciotti, Neeraja Venkateswaran, Brad J. Biggerstaff
Software Mentions: 3
Published: about 11 years ago

10.1371/journal.pone.0214110

The Gag protein PEG10 binds to RNA and regulates trophoblast stem cell lineage specification
Cited by: 43
Author(s): Mona Abed, Erik Verschueren, Hanna G. Budayeva, Peter Liu, Donald S. Kirkpatrick, Rohit Reja, Sarah Kummerfeld, Joshua D. Webster, Sarah Gierke, Mike Reichelt, Keith R. Anderson, Robert J. Newman, Merone Roose‐Girma, Zora Modrušan, Hazal Pektas, Emin Maltepe, Kim Newton, Vishva M. Dixit
Software Mentions: 3
Published: over 5 years ago

10.1186/s12864-018-5364-8

Genome-wide analysis of consistently RNA edited sites in human blood reveals interactions with mRNA processing genes and suggests correlations with cell types and biological variables
Cited by: 8
Author(s): Edoardo Giacopuzzi, Massimo Gennarelli, Chiara Sacco, Alice Filippini, Jessica Mingardi, Chiara Magri, Alessandro Barbon
Software Mentions: 3
Published: about 6 years ago

10.1155/2014/218769

Impact of Exogenous Gonadotropin Stimulation on Circulatory and Follicular Fluid Cytokine Profiles
Cited by: 8
Author(s): N. Ellissa Baskind, Nicolas M. Orsi, Vinay Sharma
Software Mentions: 3
Published: almost 11 years ago

10.7554/eLife.37059

Context-enriched interactome powered by proteomics helps the identification of novel regulators of macrophage activation
Cited by: 10
Author(s): Arda Halu, Jianguo Wang, Hiroshi Iwata, Alexander Mojcher, Ana Luisa Abib, Sasha A Singh, Masamichi Aikawa, Amitabh Sharma
Software Mentions: 3
Published: about 6 years ago

10.1007/s10522-017-9741-5

A network-based meta-analysis for characterizing the genetic landscape of human aging
Cited by: 15
Author(s): Hagen Blankenburg, Peter P. Pramstaller, Francisco S. Domingues
Software Mentions: 3
Published: about 7 years ago

10.12688/f1000research.7629.1

Recent advances in large-scale protein interactome mapping
Cited by: 29
Author(s): Virja Mehta, Laura Trinkle-Mulcahy
Software Mentions: 2
Published: over 8 years ago

10.1186/s13071-018-2745-4

A recombinant Fasciola gigantica 14-3-3 epsilon protein (rFg14-3-3e) modulates various functions of goat peripheral blood mononuclear cells
Cited by: 22
Author(s): Ai-Ling Tian, Mingmin Lu, Guillermo Calderón-Mantilla, Evangelia Petsalaki, Tania Dottorini, Xiaowei Tian, YuJian Wang, Si-Yang Huang, Junling Hou, Xiangrui Li, Hany M. Elsheikha, Xing‐Quan Zhu
Software Mentions: 2
Published: almost 7 years ago

10.3390/ijms22094450

Discovery–Versus Hypothesis–Driven Detection of Protein–Protein Interactions and Complexes
Cited by: 8
Author(s): Isabell Bludau
Software Mentions: 2
Published: over 3 years ago

10.3389/fmolb.2020.584053

PAXX, Not NHEJ1 Is an Independent Prognosticator in Colon Cancer
Cited by: 7
Author(s): Mohit Arora, Sarita Kumari, Jay Singh, Anita Chopra, Shyam S. Chauhan
Software Mentions: 2
Published: about 4 years ago

10.1074/jbc.M117.807487

A protein interaction network centered on leucine-rich repeats and immunoglobulin-like domains 1 (LRIG1) regulates growth factor receptors
Cited by: 24
Author(s): Mahmood Faraz, Carl Herdenberg, Camilla Holmlund, Roger Henriksson, Håkan Hedman
Software Mentions: 2
Published: almost 7 years ago

10.1371/journal.pcbi.1006657

A data-driven interactome of synergistic genes improves network-based cancer outcome prediction
Cited by: 15
Author(s): Amin Allahyar, Joske Ubels, Jeroen de Ridder
Software Mentions: 2
Published: almost 6 years ago

10.1186/s13059-020-02228-4

HiDeF: identifying persistent structures in multiscale ‘omics data
Cited by: 25
Author(s): Fan Zheng, She Zhang, Christopher Churas, Dexter Pratt, İvet Bahar, Trey Ideker
Software Mentions: 2
Published: almost 4 years ago

10.7554/eLife.18715

A computational interactome and functional annotation for the human proteome
Cited by: 59
Author(s): José Ignacio Garzón, Lei Deng, Diana Murray, Sagi Shapira, Donald Petrey, Barry Honig
Software Mentions: 2
Published: about 8 years ago

10.15252/msb.20188438

Complex‐centric proteome profiling by <scp>SEC</scp> ‐ <scp>SWATH</scp> ‐ <scp>MS</scp>
Cited by: 99
Author(s): Moritz Heusel, Isabell Bludau, George Rosenberger, Robin Hafen, M Frank, Amir Banaei‐Esfahani, Audrey van Drogen, Ben C. Collins, Matthias Gstaiger, Ruedi Aebersold
Software Mentions: 2
Published: almost 6 years ago

10.3389/fgene.2019.00715

Precise Prediction of Calpain Cleavage Sites and Their Aberrance Caused by Mutations in Cancer
Cited by: 22
Author(s): Zexian Liu, Kai Yu, Jingsi Dong, Lifeng Zhao, Yi Li, Qingfeng Zhang, Shihua Li, Yangge Du, Han Cheng
Software Mentions: 2
Published: over 5 years ago

10.21203/rs.3.rs-28592/v1

Interactome of SARS-CoV-2 / nCoV19 modulated host proteins with computationally predicted PPIs
Cited by: 11
Author(s): Kalyani B. Karunakaran, N. Balakrishnan, Madhavi K. Ganapathiraju
Software Mentions: 2
Published: over 4 years ago

10.1074/jbc.RA120.015468

PFN2 and NAA80 cooperate to efficiently acetylate the N-terminus of actin
Cited by: 16
Author(s): Rasmus Ree, L. A. P. De Kind, Anna Kaziales, Sylvia Varland, Minglu Dai, Klaus Richter, Adrian Drazic, Thomas Arnesen
Software Mentions: 2
Published: about 4 years ago

10.3389/fphys.2021.624097

Robust Physiological Metrics From Sparsely Sampled Networks
Cited by: 7
Author(s): Alan A. Cohen, Sébastien Leblanc, Xavier Roucou
Software Mentions: 2
Published: almost 4 years ago

10.1371/journal.pone.0238010

A comparison of non-magnetic and magnetic beads for measuring IgG antibodies against Plasmodium vivax antigens in a multiplexed bead-based assay using Luminex technology (Bio-Plex 200 or MAGPIX)
Cited by: 13
Author(s): Ramin Mazhari, Jessica Brewster, Rich Fong, Caitlin Bourke, Zoe Liu, Eizo Takashima, Takafumi Tsuboi, Wai‐Hong Tham, Matthias Harbers, Chetan E. Chitnis, Julie Healer, Maria Ome-Kaius, Jetsumon Sattabongkot, James W. Kazura, Leanne J. Robinson, Christopher L. King, Ivo Müeller, Rhea J. Longley
Software Mentions: 2
Published: about 4 years ago

10.1186/1742-4933-9-25

Immune correlates of aging in outdoor-housed captive rhesus macaques (Macaca mulatta)
Cited by: 42
Author(s): Elizabeth S. Didier, Chie Sugimoto, Lisa C. Bowers, Imtiaz Ali Khan, Marcelo J. Kuroda
Software Mentions: 1
Published: about 12 years ago

10.1074/jbc.RA117.000847

The nucleoside-diphosphate kinase NME3 associates with nephronophthisis proteins and is required for ciliary function during renal development
Cited by: 11
Author(s): Sylvia Hoff, Daniel Epting, Nathalie Falk, Sophie Schroda, Daniela A. Braun, Jan Halbritter, Friedhelm Hildebrandt, Albrecht Kramer-Zucker, Carsten Bergmann, Gerd Walz, Soeren S. Lienkamp
Software Mentions: 1
Published: over 6 years ago

10.1371/journal.ppat.1000386

High Throughput Functional Assays of the Variant Antigen PfEMP1 Reveal a Single Domain in the 3D7 Plasmodium falciparum Genome that Binds ICAM1 with High Affinity and Is Targeted by Naturally Acquired Neutralizing Antibodies
Cited by: 64
Author(s): Andrew V. Oleinikov, Emily Amos, Isaac Tyler Frye, Eddie Rossnagle, Theonest K. Mutabingwa, Michal Fried, Patrick E. Duffy
Software Mentions: 1
Published: over 15 years ago

10.1186/1465-9921-11-102

NO2 inhalation induces maturation of pulmonary CD11c+ cells that promote antigen-specific CD4+ T cell polarization
Cited by: 25
Author(s): Samantha R. Hodgkins, Jennifer L. Ather, Sara Paveglio, Jenna L. Allard, Laurie W Leclair, Benjamin T. Suratt, Jonathan E. Boyson, Matthew E. Poynter
Software Mentions: 1
Published: over 14 years ago

10.1038/srep15940

Mouse adaptation of influenza B virus increases replication in the upper respiratory tract and results in droplet transmissibility in ferrets
Cited by: 20
Author(s): Eunha Kim, Su‐Jin Park, Hyeok‐il Kwon, Se Mi Kim, Young Il Kim, Min‐Suk Song, Eung-Ryul Choi, Philippe Noriel Q. Pascua, Young‐Ki Choi
Software Mentions: 1
Published: about 9 years ago

10.1038/s41598-018-22401-x

Long-term regeneration and remodeling of the pig esophagus after circumferential resection using a retrievable synthetic scaffold carrying autologous cells
Cited by: 54
Author(s): Saverio La Francesca, Johnathon M. Aho, Matthew Barron, Ellen W. Blanco, Sherif Soliman, Lena Kalenjian, Ariel D. Hanson, Elisaveta Todorova, Matthew L. Marsh, Ka Lia Burnette, Harout DerSimonian, Robert D. Odze, Dennis A. Wigle
Software Mentions: 1
Published: almost 7 years ago

10.1038/s41598-019-42585-0

Comprehensive analysis of Fc-mediated IgM binding to the Plasmodium falciparum erythrocyte membrane protein 1 family in three parasite clones
Cited by: 17
Author(s): María del Pilar Quintana, Gertrude Ecklu-Mensah, Sergey Tcherniuk, Sisse B. Ditlev, Andrew V. Oleinikov, Lars Hviid, Mary Lopez-Perez
Software Mentions: 1
Published: over 5 years ago

10.1038/s41598-019-45349-y

HyperFoods: Machine intelligent mapping of cancer-beating molecules in foods
Cited by: 43
Author(s): Kirill Veselkov, Guadalupe Gonzalez, Shahad Aljifri, Dieter Galea, Reza Mirnezami, Jozef Youssef, Michael M. Bronstein, Ivan Laponogov
Software Mentions: 1
Published: over 5 years ago

10.1038/s41598-019-48316-9

In vitro exercise model using contractile human and mouse hybrid myotubes
Cited by: 24
Author(s): Weijian Chen, Mazvita R. Nyasha, Masashi Koide, Masahiro Tsuchiya, Naoki Suzuki, Yoshihiro Hagiwara, Masashi Akiyama, Makoto Kanzaki
Software Mentions: 1
Published: over 5 years ago

10.1038/s41598-019-50874-x

Overexpression of BZW1 is an independent poor prognosis marker and its down-regulation suppresses lung adenocarcinoma metastasis
Cited by: 9
Author(s): Jean Chiou, Yu‐Chan Chang, Yi-Hua Jan, Hsing Fang Tsai, Chang-Hao Yang, Ming Shyan Huang, Yung Luen Yu, Michael Hsiao
Software Mentions: 1
Published: about 5 years ago

10.3390/toxins10010040

Molecular and Physiological Effects on the Small Intestine of Weaner Pigs Following Feeding with Deoxynivalenol-Contaminated Feed
Cited by: 21
Author(s): J. Alex Pasternak, Vaishnavi Iyer Aka Aiyer, Glenn Hamonic, A. D. Beaulieu, Daniel A Columbus, Heather L. Wilson
Software Mentions: 1
Published: almost 7 years ago

10.1155/2015/902821

Clinical Comparison of QUANTA Flash dsDNA Chemiluminescent Immunoassay with Four Current Assays for the Detection of Anti-dsDNA Autoantibodies
Cited by: 31
Author(s): María Infantino, Francesca Meacci, Chelsea Bentow, Peter Martis, Maurizio Benucci, Antonella Afeltra, Amelia Rigon, Fabiola Atzeni, Piercarlo Sarzi-Puttini, Mariangela Manfredi, Michael Mähler
Software Mentions: 1
Published: almost 10 years ago

10.7554/eLife.58925

Integrative analysis of large-scale loss-of-function screens identifies robust cancer-associated genetic interactions
Cited by: 23
Author(s): Christopher J. Lord, Niall Quinn, Colm J. Ryan
Software Mentions: 1
Published: over 4 years ago

10.7554/eLife.57306

Interaction mapping of endoplasmic reticulum ubiquitin ligases identifies modulators of innate immune signalling
Cited by: 50
Author(s): Emma Fenech, Federica Lari, P. David Charles, Román Fischer, Marie Laétitia-Thézénas, Katrin Bagola, Adrienne W. Paton, James C. Paton, Mads Gyrd‐Hansen, Benedikt M. Kessler, John C. Christianson
Software Mentions: 1
Published: over 4 years ago

10.3390/ijms18102010

A Comprehensive Survey of the Roles of Highly Disordered Proteins in Type 2 Diabetes
Cited by: 34
Author(s): Zhihua Du, Vladimir N. Uversky
Software Mentions: 1
Published: over 7 years ago

10.3390/ijms22147270

Knock-Out of ACBD3 Leads to Dispersed Golgi Structure, but Unaffected Mitochondrial Functions in HEK293 and HeLa Cells
Cited by: 2
Author(s): Tereza Daňhelovská, Lucie Zdražilová, Hana Štufková, Marie Vanišová, Nikol Volfová, Jana Křížová, Ondřej Kuda, Jana Sládková, Markéta Tesařová
Software Mentions: 1
Published: over 3 years ago

10.18632/oncotarget.12879

Comparative analysis of protein interactome networks prioritizes candidate genes with cancer signatures
Cited by: 14
Author(s): Yongsheng Li, Nidhi Sahni, S. Stephen Yi
Software Mentions: 1
Published: about 8 years ago

10.1186/1479-5876-11-64

Antitumor effects of L-BLP25 Antigen-Specific tumor immunotherapy in a novel human MUC1 transgenic lung cancer mouse model
Cited by: 22
Author(s): Gregory T. Wurz, Audrey Gutierrez, Brittany E. Greenberg, Daniel P. Vang, Stephen M. Griffey, Cheng–Yuan Kao, Michael Wolf, Michael W. DeGregorio
Software Mentions: 1
Published: almost 12 years ago

10.3389/fneur.2019.00562

Identification of Cellular Pathogenicity Markers for SIL1 Mutations Linked to Marinesco-Sjögren Syndrome
Cited by: 6
Author(s): Christian Gatz, Denisa Hathazi, Ute Münchberg, Stephan Buchkremer, Thomas Labisch, Benjamin Munro, Rita Horváth, Ana Töpf, Joachim Weis, Andreas Roos
Software Mentions: 1
Published: over 5 years ago

10.1186/1471-2199-11-44

New miRNA labeling method for bead-based quantification
Cited by: 27
Author(s): Alberto Biscontin, Silvia Casara, Stefano Cagnin, Lucia Tombolan, Angelo Rosolen, Gerolamo Lanfranchi, Cristiano De Pittà
Software Mentions: 1
Published: almost 15 years ago

10.1186/s13071-018-3148-2

The pervasive effects of recombinant Fasciola gigantica Ras-related protein Rab10 on the functions of goat peripheral blood mononuclear cells
Cited by: 10
Author(s): Ai Ling Tian, Mingmin Lu, Fu Kai Zhang, Guillermo Calderón-Mantilla, Evangelia Petsalaki, Xiaowei Tian, Wenjuan Wang, Si Yang Huang, Xiangrui Li, Hany M. Elsheikha, Xing Zhu
Software Mentions: 1
Published: about 6 years ago

10.1186/1743-8977-10-39

Asbestos and erionite prime and activate the NLRP3 inflammasome that stimulates autocrine cytokine release in human mesothelial cells
Cited by: 102
Author(s): Jedd M. Hillegass, Jill Miller, Maximilian B. MacPherson, Catherine M. Westbom, Mutlay Sayan, Joyce K. Thompson, Sherrill L. Macura, Timothy N. Perkins, Stacie L. Beuschel, Vlada Alexeeva, Harvey I. Pass, Chad Steele, Brooke T. Mossman, Arti Shukla
Software Mentions: 1
Published: over 11 years ago

10.1371/journal.pcbi.1007403

Benchmarking network algorithms for contextualizing genes of interest
Cited by: 7
Author(s): Abby Hill, Scott Gleim, Florian Kiefer, Frederic Sigoillot, Joseph Loureiro, Jeremy L. Jenkins, Melody K. Morris
Software Mentions: 1
Published: about 5 years ago

10.1371/journal.pcbi.1008239

Multiscale community detection in Cytoscape
Cited by: 29
Author(s): Akshat Singhal, Song Cao, Christopher Churas, Dexter Pratt, Santo Fortunato, Fan Zheng, Trey Ideker
Software Mentions: 1
Published: about 4 years ago

10.1371/journal.pgen.1008519

The great hairball gambit
Cited by: 33
Author(s): Jonathan Flint, Trey Ideker
Software Mentions: 1
Published: about 5 years ago

10.1371/journal.pone.0046916

Salivary Immune Responses to the 7-Valent Pneumococcal Conjugate Vaccine in the First 2 Years of Life
Cited by: 16
Author(s): Gerwin D. Rodenburg, Elisabeth A. M. Sanders, Elske J. M. van Gils, Reinier H. Veenhoven, Tomasz Zborowski, Germie P. J. M. van den Dobbelsteen, Andries C. Bloem, Guy A. M. Berbers, Debby Bogaert
Software Mentions: 1
Published: about 12 years ago

10.1371/journal.pone.0201205

Cross-laboratory evaluation of multiplex bead assays including independent common reference standards for immunological monitoring of observational and interventional human studies
Cited by: 10
Author(s): Krista E. van Meijgaarden, Bhagwati Khatri, Steven G. Smith, Anne M. F. H. Drittij, Roelof A. de Paus, Jelle J. Goeman, Mei Mei Ho, Hazel M. Dockrell, Helen McShane, Simone A. Joosten, Tom H. M. Ottenhoff
Software Mentions: 1
Published: over 6 years ago

10.1371/journal.pone.0204001

Improvement of reverse sequence algorithm for syphilis diagnosis using optimal treponemal screening assay signal-to-cutoff ratio
Cited by: 5
Author(s): Bouchra Serhir, Annie‐Claude Labbé, Florence Doualla-Bell, Marc Simard, Gilles Lambert, Annick Trudelle, Jean Longtin, Cécile Tremblay, Claude Fortin
Software Mentions: 1
Published: over 6 years ago

10.1371/journal.pone.0009599

60 kD Ro and nRNP A Frequently Initiate Human Lupus Autoimmunity
Cited by: 50
Author(s): Latisha Heinlen, Micah T. McClain, Lauren L. Ritterhouse, Benjamin F. Bruner, C. Edgerton, Michael P. Keith, Judith A. James, John B. Harley
Software Mentions: 1
Published: almost 15 years ago

10.1371/journal.pone.0037100

Autoimmunity in CD73/Ecto-5′-Nucleotidase Deficient Mice Induces Renal Injury
Cited by: 36
Author(s): Cornelia Blume, Agnieszka Felix, Nelli Shushakova, Faikah Gueler, Christine S. Falk, Hermann Haller, Juergen Schrader
Software Mentions: 1
Published: over 12 years ago

10.1371/journal.pone.0078013

Human Bladder Uroepithelial Cells Synergize with Monocytes to Promote IL-10 Synthesis and Other Cytokine Responses to Uropathogenic Escherichia coli
Cited by: 23
Author(s): Benjamin L. Duell, Alison J. Carey, Samantha J. Dando, Mark A. Schembri, Glen C. Ulett
Software Mentions: 1
Published: about 11 years ago

10.1371/journal.pone.0036861

Short-Term Long Chain Omega3 Diet Protects from Neuroinflammatory Processes and Memory Impairment in Aged Mice
Cited by: 162
Author(s): François Labrousse, Agnès Nadjar, Corinne Joffre, Laurence Costes, Agnès Aubert, Stéphane Grégoire, Lionel Brétillon, Sophie Layé
Software Mentions: 1
Published: over 12 years ago

10.1371/journal.pone.0132570

Association Study between Cervical Lesions and Single or Multiple Vaccine-Target and Non-Vaccine Target Human Papillomavirus (HPV) Types in Women from Northeastern Brazil
Cited by: 14
Author(s): Bárbara Simas Chagas, Manola Comar, Ana Pavla Almeida Diniz Gurgel, S. S. L. Paiva, Silva Seraceni, Antonio Carlos de Freitas, Sérgio Crovella
Software Mentions: 1
Published: over 9 years ago

10.1371/journal.pone.0022928

Quantitative Analysis of Protein Phosphorylations and Interactions by Multi-Colour IP-FCM as an Input for Kinetic Modelling of Signalling Networks
Cited by: 10
Author(s): Sumit Deswal, Anna Schulze, Thomas Höfer, Wolfgang W. A. Schamel
Software Mentions: 1
Published: over 13 years ago

10.1371/journal.pone.0015352

Transcriptome Analysis Revealed Unique Genes as Targets for the Anti-inflammatory Action of Activated Protein C in Human Macrophages
Cited by: 6
Author(s): Cláudia Pereira, Esther Bächli, Dominik J. Schaer, Gabriele Schoedon
Software Mentions: 1
Published: about 14 years ago

10.1371/journal.pone.0191916

Modulation of HIV replication in monocyte derived macrophages (MDM) by steroid hormones
Cited by: 17
Author(s): Krishnakumar Devadas, Santanu Biswas, Viswanath Ragupathy, Sherwin Lee, Andrew I. Dayton, Indira Hewlett
Software Mentions: 1
Published: almost 7 years ago

10.1371/journal.pone.0152156

Biomarkers in Exhaled Breath Condensate Are Not Predictive for Pulmonary Exacerbations in Children with Cystic Fibrosis: Results of a One-Year Observational Study
Cited by: 6
Author(s): Marieke van Horck, Ariel Alonso, Geertjan Wesseling, Karin de Winter-de Groot, Wim van Aalderen, Hanneke Hendriks, Björn Winkens, Ger T. Rijkers, Quirijn Jöbsis, Edward Dompeling
Software Mentions: 1
Published: over 8 years ago

10.1371/journal.pone.0119434

Prediction of Asthma Exacerbations in Children by Innovative Exhaled Inflammatory Markers: Results of a Longitudinal Study
Cited by: 27
Author(s): Dillys van Vliet, Ariel Alonso, Ger T. Rijkers, Jan Heynens, Philippe Rosias, Jean Muris, Quirijn Jöbsis, Edward Dompeling
Software Mentions: 1
Published: almost 10 years ago

10.3390/cancers11030299

The Novel Mnk1/2 Degrader and Apoptosis Inducer VNLG-152 Potently Inhibits TNBC Tumor Growth and Metastasis
Cited by: 16
Author(s): Senthilmurugan Ramalingam, Vidya P. Ramamurthy, Lalji K. Gediya, Francis N. Murigi, Puranik Purushottamachar, Weiliang Huang, Eun Yong Choi, Yuji Zhang, Tadas S. Vasaitis, Maureen A. Kane, Rena G. Lapidus, Vincent C.O. Njar
Software Mentions: 1
Published: almost 6 years ago

10.3390/cells9030619

Valproic Acid Promotes Early Neural Differentiation in Adult Mesenchymal Stem Cells Through Protein Signalling Pathways
Cited by: 17
Author(s): Jerran Santos, Thibaut Hubert, Bruce Milthorpe
Software Mentions: 1
Published: almost 5 years ago

10.1155/2013/978202

Highlights on Novel Technologies for the Detection of Antibodies to Ro60, Ro52, and SS-B
Cited by: 15
Author(s): María Infantino, Chelsea Bentow, Andrea Seaman, Maurizio Benucci, Fabiola Atzeni, Piercarlo Sarzi-Puttini, Biagio Olivito, Francesca Meacci, Mariangela Manfredi, Michael Mähler
Software Mentions: 1
Published: almost 12 years ago

10.1111/j.1365-2230.2011.04172.x

No impairment of monocyte‐derived Langerhans cell phenotype or function in early‐onset psoriasis
Cited by: 8
Author(s): Frances L. Shaw, Ian Kimber, Rummana Begum, Marie Cumberbatch, Rebecca J. Dearman, C.E.M. Griffiths
Software Mentions: 1
Published: over 13 years ago

10.1186/s12014-019-9237-1

Deep undepleted human serum proteome profiling toward biomarker discovery for Alzheimer’s disease
Cited by: 87
Author(s): Kaushik Dey, Hong Wang, Mingming Niu, Bing Bai, Xusheng Wang, Yuxin Li, Ji-Hoon Cho, Haidong Tan, Ashutosh Mishra, Anthony A. High, Ping‐Chung Chen, Zhiping Wu, Thomas G. Beach, Junmin Peng
Software Mentions: 1
Published: over 5 years ago

10.12688/f1000research.8818.1

Mapping paths: new approaches to dissect eukaryotic signaling circuitry
Cited by: 0
Author(s): Nebibe Mutlu, Anuj Kumar
Software Mentions: 1
Published: over 8 years ago

10.3389/fbioe.2021.727869

Engineering Functional Vasculature in Decellularized Lungs Depends on Comprehensive Endothelial Cell Tropism
Cited by: 3
Author(s): Ifeolu Akinnola, Daniel Rossi, Carolyn Meyer, Ashley S. Lindsey, Douglas R Haase, Samuel Fogas, Michael Ehrhardt, Rachel Blue, Alex Price, Max Johnson, Diego F. Alvarez, Doris A. Taylor, Angela Panoskaltsis‐Mortari
Software Mentions: 1
Published: over 3 years ago

10.3389/fbioe.2020.00730

Investigation and Prediction of Human Interactome Based on Quantitative Features
Cited by: 11
Author(s): Xiaoyong Pan, Tao Zeng, Yuhang Zhang, Lei Chen, Feng Kong, Tao Huang, Yi Cai
Software Mentions: 1
Published: over 4 years ago

10.3389/fcimb.2020.570423

Dysbiotic Lesional Microbiome With Filaggrin Missense Variants Associate With Atopic Dermatitis in India
Cited by: 15
Author(s): Shankha Nath, Naina Kumari, Debabrata Bandyopadhyay, Neloy Sinha, Partha P. Majumder, Rupak Mitra, Souvik Mukherjee
Software Mentions: 1
Published: about 4 years ago

10.3389/fimmu.2019.02160

Characterization of cxorf21 Provides Molecular Insight Into Female-Bias Immune Response in SLE Pathogenesis
Cited by: 26
Author(s): Valerie M. Harris, Kristi A. Koelsch, Biji T. Kurien, Isaac T.W. Harley, Jonathan D. Wren, John B. Harley, R. Hal Scofield
Software Mentions: 1
Published: about 5 years ago

10.3389/fimmu.2016.00408

Supplementation with Lactobacillus plantarum WCFS1 Prevents Decline of Mucus Barrier in Colon of Accelerated Aging Ercc1−/Δ7 Mice
Cited by: 42
Author(s): Adriaan A. van Beek, Bruno Sovran, Floor Hugenholtz, Ben Meijer, Joanne A. Hoogerland, Violeta Mihailova, Corine van der Ploeg, Clara Belzer, Mark V. Boekschoten, Jan H.J. Hoeijmakers, Wilbert P. Vermeij, Paul de Vos, Jerry M. Wells, Pieter J. M. Leenen, Claudio Nicoletti, Rudi W. Hendriks, H.F.J. Savelkoul
Software Mentions: 1
Published: about 8 years ago

10.3389/fnmol.2019.00029

20 Years of Secretagogin: Exocytosis and Beyond
Cited by: 19
Author(s): Magdalena Maj, Ludwig Wagner, Verena Tretter
Software Mentions: 1
Published: almost 6 years ago

10.3390/genes7070037

Willing to Be Involved in Cancer
Cited by: 7
Author(s): Francis James Gunn-Moore, Andrew Tilston-Lünel, Paul A. Reynolds
Software Mentions: 1
Published: over 8 years ago