Ecosyste.ms: Papers
An open API service providing mapping between scientific papers and software projects that are mentioned in them.
All mentions data is based on the CZI Software Mentions dataset.
Projects: pypi: motif
https://packages.ecosyste.ms/registries/pypi.org/packages/motif
motif - Python module written by Wu Fuheng
11 versions
Latest release: about 9 years ago
14 downloads last month
Papers Mentioning motif 14
10.3390/antiox10040627
The Human 2-Cys Peroxiredoxins form Widespread, Cysteine-Dependent- and Isoform-Specific Protein-Protein InteractionsCited by: 16
Author(s): Loes van Dam, Marc Pagès-Gallego, Paulien E. Polderman, Robert M. van Es, Boudewijn M.T. Burgering, Harmjan R. Vos, Tobias B. Dansen
Software Mentions: 7
Published: over 3 years ago
10.1186/s12859-021-04355-6
Fast and exact quantification of motif occurrences in biological sequencesCited by: 1
Author(s): Mattia Prosperi, Simone Marini, Christina Boucher
Software Mentions: 5
Published: almost 3 years ago
10.1186/s12864-017-3978-x
Succinyl-proteome profiling of Dendrobium officinale, an important traditional Chinese orchid herb, revealed involvement of succinylation in the glycolysis pathwayCited by: 37
Author(s): Shi Feng, Kaili Jiao, Hong Guo, Min Jiang, Juan Hao, Huizhong Wang, Chenjia Shen
Software Mentions: 5
Published: about 7 years ago
10.1371/journal.pbio.3000170
The temporal profile of activity-dependent presynaptic phospho-signalling reveals long-lasting patterns of poststimulus regulationCited by: 24
Author(s): Kasper Engholm-Keller, Ashley J. Waardenberg, Johannes Alexander Müller, Jesse R. Wark, Rowena N Fernando, Jonathan W. Arthur, Phillip J. Robinson, Dirk Dietrich, Susanne Schoch, Mark E. Graham
Software Mentions: 5
Published: over 5 years ago
10.1128/mBio.02333-17
Multisystem Analysis of <i>Mycobacterium tuberculosis</i> Reveals Kinase-Dependent Remodeling of the Pathogen-Environment InterfaceCited by: 49
Author(s): Xavier Carette, John Platig, David C. Young, Michaela Helmel, A. E. Young, Zhe Wang, Lakshmi-Prasad Potluri, Cameron Stuver Moody, Jumei Zeng, Sladjana Prisic, Joseph N. Paulson, Jan Muntel, Ashoka V. R. Madduri, Jorge J. Velarde, Jacob A. Mayfield, Christopher P. Locher, Tiansheng Wang, John Quackenbush, Kyu Y. Rhee, D. Branch Moody, Hanno Steen, Robert N. Husson
Software Mentions: 5
Published: over 6 years ago
10.1371/journal.pone.0178603
Proteome-wide profiling of protein lysine acetylation in Aspergillus flavusCited by: 17
Author(s): Yangyong Lv
Software Mentions: 4
Published: over 7 years ago
10.1002/mbo3.320
Altered acetylation and succinylation profiles in <i>Corynebacterium glutamicum</i> in response to conditions inducing glutamate overproductionCited by: 49
Author(s): Yuta Mizuno, Megumi Nagano‐Shoji, Shosei Kubo, Y. Kawamura, Ayako Yoshida, Hisashi Kawasaki, Makoto Nishiyama, Minoru Yoshida, Saori Kosono
Software Mentions: 4
Published: almost 9 years ago
10.1186/s12859-015-0657-2
Comparison of phosphorylation patterns across eukaryotes by discriminative N-gram analysisCited by: 8
Author(s): Itziar Frades, Svante Resjö, Erik Andréasson
Software Mentions: 4
Published: about 9 years ago
10.1186/s12864-021-07847-0
Global analysis of protein lysine 2-hydroxyisobutyrylation (Khib) profiles in Chinese herb rhubarb (Dahuang)Cited by: 5
Author(s): Tao Qi, Jinping Li, Hong Wang, Xiaofan Han, Junrong Li, Jinzhe Du
Software Mentions: 3
Published: about 3 years ago
10.3390/ijms20020451
Comparative Phosphoproteomic Analysis of Barley Embryos with Different Dormancy during ImbibitionCited by: 10
Author(s): Shin-nosuke Ishikawa, José M. Barrero, Fumiyuki Takahashi, Scott C. Peck, Frank Gubler, Kazuo Shinozaki, Taishi Umezawa
Software Mentions: 3
Published: over 5 years ago
10.1186/s12864-017-3977-y
The first succinylome profile of Trichophyton rubrum reveals lysine succinylation on proteins involved in various key cellular processesCited by: 24
Author(s): Xingye Xu, Tao Liu, Jian Yang, Lihong Chen, Bo Liu, Candong Wei, Lingling Wang, Qi Jin
Software Mentions: 3
Published: about 7 years ago
10.3389/fmicb.2018.02591
Transcriptome and Resistance-Related Genes Analysis of Botrytis cinerea B05.10 Strain to Different Selective Pressures of Cyprodinil and FenhexamidCited by: 8
Author(s): Xuegui Wang, Changwei Gong, Yun Zhao, Litao Shen
Software Mentions: 3
Published: almost 6 years ago
10.1186/s13072-019-0298-1
MeCP2-E1 isoform is a dynamically expressed, weakly DNA-bound protein with different protein and DNA interactions compared to MeCP2-E2Cited by: 33
Author(s): Alexia Martínez de Paz, Leila Khajavi, Hélène Martin, Rafael Clavería-Gimeno, Susanne tom Dieck, Manjinder S. Cheema, José Vicente Sánchez-Mut, Malgorzata M. Moksa, Annaïck Carles, Nick I. Brodie, Taimoor I. Sheikh, Melissa E. Freeman, Evgeniy V. Petrotchenko, Christoph H. Borchers, Erin M. Schuman, Matthias Zytnicki, Adrián Velázquez‐Campoy, Olga Abián, Martin Hirst, Manel Esteller, John B. Vincent, Cécile E. Malnou, Juan Ausió
Software Mentions: 2
Published: almost 5 years ago
10.1128/mSystems.01316-20
Systematic Analysis of the Lysine Crotonylome and Multiple Posttranslational Modification Analysis (Acetylation, Succinylation, and Crotonylation) in Candida albicansCited by: 11
Author(s): Xiaowei Zhou, Nana Song, Dongmei Li, Xiaofang Li, Weida Liu
Software Mentions: 2
Published: over 3 years ago