Ecosyste.ms: Papers
An open API service providing mapping between scientific papers and software projects that are mentioned in them.
All mentions data is based on the CZI Software Mentions dataset.
Projects: cran: superheat
https://packages.ecosyste.ms/registries/cran.r-project.org/packages/superheat
A Graphical Tool for Exploring Complex Datasets Using Heatmaps
1 version
Latest release: almost 8 years ago
1 dependent package
964 downloads last month
Papers Mentioning superheat 14
10.1093/bioinformatics/btx657
heatmaply: an R package for creating interactive cluster heatmaps for online publishingCited by: 334
Author(s): Tal Galili, Alan O’Callaghan, Jonathan Savage, Carson Sievert
Software Mentions: 14
Published: about 7 years ago
10.1038/s42003-019-0646-5
Histone acetylation orchestrates wound-induced transcriptional activation and cellular reprogramming in ArabidopsisCited by: 59
Author(s): Bart Rymen, Ayako Kawamura, Alice Lambolez, Soichi Inagaki, Arika Takebayashi, Akira Iwase, Yuki Sakamoto, Kaori Sako, David S. Favero, Momoko Ikeuchi, Takamasa Suzuki, Masanori Seki, Tetsuji Kakutani, François Roudier, Keiko Sugimoto
Software Mentions: 10
Published: about 5 years ago
10.3390/microorganisms8111741
Bile Acid Signal Molecules Associate Temporally with Respiratory Inflammation and Microbiome Signatures in Clinically Stable Cystic Fibrosis PatientsCited by: 11
Author(s): Stephanie Flynn, F. Jerry Reen, José A. Caparrós-Martín, David F. Woods, Jörg Peplies, Sarath Ranganathan, Stephen M. Stick, Fergal O’Gara
Software Mentions: 6
Published: about 4 years ago
10.1371/journal.pone.0207538
Integrating spatial indicators in the surveillance of exploited marine ecosystemsCited by: 11
Author(s): Marta M. Rufino, Nicolas Bez, Anik Brind’Amour
Software Mentions: 6
Published: about 6 years ago
10.1186/s12935-019-0731-3
Potential new biomarkers for endometrial cancerCited by: 37
Author(s): Michelle H. Townsend, Zac E. Ence, Abigail M. Felsted, Alyssa Parker, Stephen R. Piccolo, Richard A. Robison, Kim L. O’Neill
Software Mentions: 5
Published: almost 6 years ago
10.14814/phy2.13376
Male apoE*3-Leiden.CETP mice on high-fat high-cholesterol diet exhibit a biphasic dyslipidemic response, mimicking the changes in plasma lipids observed through life in menCited by: 18
Author(s): Yared Paalvast, Albert Gerding, Yanan Wang, Vincent W. Bloks, Theo H. van Dijk, Rick Havinga, Ko Willems van Dijk, Patrick C.N. Rensen, Barbara M. Bakker, Jan Albert Kuivenhoven, Albert K. Groen
Software Mentions: 5
Published: about 7 years ago
10.1038/s41598-021-96633-9
Spatio-seasonal variation of water quality influenced by land use and land cover in Lake MuhaziCited by: 15
Author(s): Edovia Dufatanye Umwali, Alishir Kurban, Alain Isabwe, Richard Mind’je, Hossein Azadi, Zengkun Guo, Madeleine Udahogora, Anathalie Nyirarwasa, Jeanine Umuhoza, Vincent Nzabarinda, Aboubakar Gasirabo, Gulnur Sabirhazi
Software Mentions: 5
Published: about 3 years ago
10.1186/s13068-018-1193-x
Increasing the economic value of lignocellulosic stillage through medium-chain fatty acid productionCited by: 91
Author(s): Matthew Scarborough, Griffin Lynch, Mitch Dickson, Mick McGee, Timothy J. Donohue, Daniel R. Noguera
Software Mentions: 4
Published: over 6 years ago
10.1186/s40168-018-0539-8
Single-cell genomics of co-sorted Nanoarchaeota suggests novel putative host associations and diversification of proteins involved in symbiosisCited by: 31
Author(s): Jessica K. Jarett, Stephen Nayfach, Mircea Podar, William P. Inskeep, Natalia Ivanova, Jacob Munson-McGee, Frederik Schulz, Mark Young, Zackary J. Jay, Jacob P. Beam, Nikos C. Kyrpides, Rex R. Malmstrom, Ramunas Stepanauskas, Tanja Woyke
Software Mentions: 4
Published: about 6 years ago
10.1186/s11689-018-9248-7
Characterization of autism spectrum disorder and neurodevelopmental profiles in youth with XYY syndromeCited by: 21
Author(s): Lisa Joseph, Cristan Farmer, Colby Chlebowski, Laura Henry, Ari M. Fish, Catherine Mankiw, Anastasia Xenophontos, Liv S. Clasen, Bethany Sauls, Jakob Seidlitz, Jonathan D. Blumenthal, Erin Torres, Audrey Thurm, Armin Raznahan
Software Mentions: 4
Published: about 6 years ago
10.1128/mSystems.00057-19
Life at Home and on the Roam: Genomic Adaptions Reflect the Dual Lifestyle of an Intracellular, Facultative SymbiontCited by: 19
Author(s): Ilia Burgsdorf, Kim M. Handley, Rinat Bar-Shalom, Patrick M. Erwin, Laura Steindler
Software Mentions: 3
Published: about 5 years ago
10.1186/s12889-017-4747-0
Effects of deworming on child and maternal health: a literature review and meta-analysisCited by: 24
Author(s): Winter M. Thayer, Adrienne Clermont, Neff Walker
Software Mentions: 2
Published: about 7 years ago
10.1038/s41396-018-0214-x
Environmental radiation alters the gut microbiome of the bank vole Myodes glareolusCited by: 45
Author(s): Anton Lavrinienko, Tapio Mappes, Eugene Tukalenko, Timothy A. Mousseau, Anders Pape Møller, Rob Knight, James T. Morton, Luke R. Thompson, Phillip C. Watts
Software Mentions: 2
Published: over 6 years ago
10.1128/JVI.01134-21
Murine Norovirus Infection Results in Anti-inflammatory Response Downstream of Amino Acid Depletion in MacrophagesCited by: 3
Author(s): Michèle Brocard, Lianshun Jia, Belinda S. Hall, Khushboo Borah, Carla S. Möller-Levet, Iliana Georgana, Frédéric Sorgeloos, Dany J. V. Beste, Ian Goodfellow, Nicolas Locker
Software Mentions: 1
Published: about 3 years ago