Ecosyste.ms: Papers
An open API service providing mapping between scientific papers and software projects that are mentioned in them.
All mentions data is based on the CZI Software Mentions dataset.
Projects: pypi: neo4j
https://packages.ecosyste.ms/registries/pypi.org/packages/neo4j
Neo4j Bolt driver for Python
80 versions
Latest release: 11 months ago
91 dependent packages
1,037,250 downloads last month
Papers Mentioning neo4j 14
10.12688/wellcomeopenres.14073.3
ANIMA: Association network integration for multiscale analysisCited by: 4
Author(s): Armin Deffur, Robert J. Wilkinson, Bongani M. Mayosi, Nicola Mulder
Software Mentions: 6
Published: almost 6 years ago
10.12688/f1000research.24345.2
Interactive exploratory data analysis of Integrative Human Microbiome Project data using MetavizCited by: 0
Author(s): Justin Wagner, Jayaram Kancherla, Domenick J. Braccia, James Matsumara, Victor Felix, Jonathan Crabtree, Anup Mahurkar, Héctor Corrada Bravo
Software Mentions: 6
Published: about 3 years ago
10.3389/fimmu.2020.606338
Specific Induction of Double Negative B Cells During Protective and Pathogenic Immune ResponsesCited by: 33
Author(s): Christoph Ruschil, Gisela Gabernet, Gildas Lepennetier, Simon Heumos, Miriam Kaminski, Zsuzsanna Hracskó, Martin Irmler, Johannes Beckers, Ulf Ziemann, Sven Nahnsen, Gregory P. Owens, Jeffrey L. Bennett, Bernhard Hemmer, Markus C. Kowarik
Software Mentions: 6
Published: over 3 years ago
10.1186/s12911-019-0750-y
A visual interactive analytic tool for filtering and summarizing large health data sets coded with hierarchical terminologies (VIADS)Cited by: 8
Author(s): Xia Jing, Matthew Emerson, David Masters, Matthew L. Brooks, Jacob Buskirk, Nasseef Abukamail, Chang Liu, James J. Cimino, Jay H. Shubrook, Sonsoles de Lacalle, Yuchun Zhou, Vimla L. Patel
Software Mentions: 4
Published: over 5 years ago
10.1371/journal.pone.0255562
An adaptive spark-based framework for querying large-scale NoSQL and relational databasesCited by: 0
Author(s): Eman A. Khashan, Ali I. El-Desouky, Sally M. Elghamrawy
Software Mentions: 4
Published: about 3 years ago
10.1371/journal.pone.0179130
biochem4j: Integrated and extensible biochemical knowledge through graph databasesCited by: 28
Author(s): Neil Swainston, Riza Theresa Batista-Navarro, Pablo Carbonell, Paul D. Dobson, Mark S. Dunstan, Adrian J. Jervis, María Vinaixa, Alan Williams, Sophia Ananiadou, Jean-Loup Faulon, Pedro Mendes, Douglas B. Kell, Nigel S. Scrutton, Rainer Breitling
Software Mentions: 2
Published: about 7 years ago
10.1093/database/baz120
RPGeNet v2.0: expanding the universe of retinal disease gene interactions networkCited by: 2
Author(s): Rodrigo Arenas-Galnares, Sergio Castillo-Lara, Vasileios Toulis, Daniel Boloc, Roser Gonzàlez‐Duarte, Gemma Marfany, Josep F. Abril
Software Mentions: 2
Published: over 5 years ago
10.1371/journal.pone.0151771
miTALOS v2: Analyzing Tissue Specific microRNA Function.Cited by: 58
Author(s): Martin Preusse, Fabian J. Theis, Nikola S. Mueller
Software Mentions: 1
Published: over 8 years ago
10.7717/peerj.11298
Measuring pathway database coverage of the phosphoproteomeCited by: 1
Author(s): Hannah Huckstep, Liam G. Fearnley, Melissa J. Davis
Software Mentions: 1
Published: over 3 years ago
10.3390/genes10020076
From Genotype to Phenotype: Through ChromatinCited by: 29
Author(s): Julia Romanowska, Anagha Joshi
Software Mentions: 1
Published: over 5 years ago
10.1186/s13326-020-00232-y
An integrative knowledge graph for rare diseases, derived from the Genetic and Rare Diseases Information Center (GARD)Cited by: 23
Author(s): Qian Zhu, Ðắc-Trung Nguyễn, Ivan Grishagin, Noel Southall, Eric Sid, Anne Pariser
Software Mentions: 1
Published: almost 4 years ago
10.1128/mBio.02248-18
Diagnostic Potential and Interactive Dynamics of the Colorectal Cancer ViromeCited by: 163
Author(s): Geoffrey D. Hannigan, Melissa B. Duhaime, Mack T. Ruffin, Charlie C. Koumpouras, Patrick D. Schloss
Software Mentions: 1
Published: over 5 years ago
10.1093/ije/dyx251
MELODI: Mining Enriched Literature Objects to Derive IntermediatesCited by: 14
Author(s): Benjamin Elsworth, Karen Dawe, Emma E. Vincent, Ryan Langdon, Brigid M. Lynch, Richard M. Martin, Caroline L Relton, Julian P T Higgins, Tom R. Gaunt
Software Mentions: 1
Published: over 6 years ago
10.7554/eLife.57443
A connectome and analysis of the adult Drosophila central brainCited by: 530
Author(s): Louis K Scheffer, Chengpei Xu, Michał Januszewski, Zhiyuan Lǚ, Shin-ya Takemura, Kenneth J. Hayworth, Gary B. Huang, Kazunori Shinomiya, Jeremy Maitlin-Shepard, Stuart Berg, Jody Clements, Philip M. Hubbard, William T. Katz, Lowell Umayam, Ting Zhao, David G. Ackerman, Tim Blakely, John A. Bogovic, Tom Dolafi, Dagmar Kainmueller, Takashi Kawase, Khaled Khairy, Laramie Leavitt, Peter H. Li, Larry Lindsey, Nicole Neubarth, Donald J. Olbris, Hideo Otsuna, Eric T. Trautman, Masayoshi Ito, Alexander Shakeel Bates, Jens Goldammer, Tanya Wolff, Robert Svirskas, Philipp Schlegel, Erika Neace, Christopher J. Knecht, Chelsea X Alvarado, Dennis A. Bailey, Samantha Ballinger, J Borycz, Brandon S Canino, Natasha Cheatham, Michael Cook, Marisa Dreher, Octave Duclos, Bryon Eubanks, Kelli Fairbanks, Samantha Finley, Nora Forknall, Audrey Francis, Gary Patrick Hopkins, E. Joyce, Sungjin Kim, Nicole Kirk, Julie Kovalyak, Shirley Lauchie, Alanna Lohff, Charli Maldonado, Emily A Manley, Sari McLin, Caroline Mooney, Miatta Ndama, Omotara Ogundeyi, Nneoma Okeoma, Christopher Ordish, Nicholas Padilla, Christopher Patrick, Tyler Paterson, Elliott E. Phillips, Emily M. Phillips, Neha Rampally, Caitlin Ribeiro, Madelaine K Robertson, Jon Thomson Rymer, Sean M. Ryan, Megan Sammons, Anne K Scott, Ashley L Scott, Aya Shinomiya, Claire Smith, Kelsey Smith, Natalie L. Smith, Margaret A. Sobeski, Alia Suleiman, Jackie Swift, Satoko Takemura, Iris Talebi, Dorota Tarnogorska, Emily Tenshaw, Temour Tokhi, John J Walsh, Tansy Yang, Jane Anne Horne, Feng Li, Ruchi Parekh, Patricia K. Rivlin, Vivek Jayaraman, Marta Costa, Gregory S.X.E. Jefferis, Kei Ito, Stephan Saalfeld, Reed A. George, Ian A. Meinertzhagen, Gerald M. Rubin, Harald F. Hess, Viren Jain, Stephen M. Plaza
Software Mentions: 1
Published: about 4 years ago