Ecosyste.ms: Papers

An open API service providing mapping between scientific papers and software projects that are mentioned in them.
All mentions data is based on the CZI Software Mentions dataset.

Projects: pypi: Markdown

https://packages.ecosyste.ms/registries/pypi.org/packages/Markdown

Python implementation of John Gruber's Markdown.
50 versions
Latest release: about 1 year ago
640 dependent packages
33,005,468 downloads last month

Papers Mentioning Markdown 14

10.1186/s12859-016-1241-0

systemPipeR: NGS workflow and report generation environment
Cited by: 148
Author(s): Tyler W. H. Backman, Thomas Girke
Software Mentions: 19
Published: about 8 years ago

Teaching Computational Reproducibility for Neuroimaging
Cited by: 15
Author(s): K. Jarrod Millman, Matthew Brett, Ross Barnowski, Jean‐Baptiste Poline
Software Mentions: 7
Published: about 6 years ago

10.1371/journal.pone.0071090

Glocal Clinical Registries: Pacemaker Registry Design and Implementation for Global and Local Integration – Methodology and Case Study
Cited by: 29
Author(s): Kátia Regina da Silva, Roberto Costa, Elizabeth Sartori Crevelari, Marianna Sobral Lacerda, Caio Marcos de Moraes Albertini, Martino Martinelli Filho, José Eduardo Santana, João Ricardo Nickenig Vissoci, Ricardo Pietrobon, Jacson Venâncio de Barros
Software Mentions: 6
Published: over 11 years ago

10.3389/fncel.2020.00245

A Primer on Constructing Plasticity Phenotypes to Classify Experience-Dependent Development of the Visual Cortex
Cited by: 2
Author(s): Justin L. Balsor, Dezi Ahuja, David Jones, Kathryn Murphy
Software Mentions: 5
Published: about 4 years ago

10.1371/journal.pcbi.1005510

Good enough practices in scientific computing
Cited by: 240
Author(s): Greg Wilson, Jenny Bryan, Karen Cranston, Justin Kitzes, Alexander J. Nederbragt, Tracy K. Teal
Software Mentions: 4
Published: over 7 years ago

10.1371/journal.pcbi.1007128

Open collaborative writing with Manubot
Cited by: 47
Author(s): Daniel S. Himmelstein, Vincent Rubinetti, David R. Slochower, Dongbo Hu, Venkat S. Malladi, Casey S. Greene, Anthony Gitter
Software Mentions: 3
Published: over 5 years ago

10.12688/f1000research.10750.2

General guidelines for biomedical software development
Cited by: 11
Author(s): Luís A. Bastião Silva, Rafael C. Jiménez, Niklas Blomberg, José Luís Oliveira
Software Mentions: 3
Published: over 7 years ago

10.1371/journal.pbio.1002614

Imagining the “open” university: Sharing scholarship to improve research and education
Cited by: 37
Author(s): Erin C. McKiernan
Software Mentions: 2
Published: about 7 years ago

10.1371/journal.pone.0174426

Computation of adherence to medication and visualization of medication histories in R with AdhereR: Towards transparent and reproducible use of electronic healthcare data
Cited by: 53
Author(s): Alexandra Dima, Dan Dediu
Software Mentions: 2
Published: over 7 years ago

10.1371/journal.pone.0240288

Empirical analysis of the text structure of original research articles in medical journals
Cited by: 8
Author(s): Nicole Heßler, Miriam Rottmann, Andreas Ziegler
Software Mentions: 2
Published: about 4 years ago

10.12688/f1000research.13477.2

Badges for sharing data and code at Biostatistics: an observational study
Cited by: 13
Author(s): Anisa Rowhani-Farid, Adrian Barnett
Software Mentions: 2
Published: over 6 years ago

10.12688/f1000research.12332.1

The ELIXIR-EXCELERATE Train-the-Trainer pilot programme: empower researchers to deliver high-quality training
Cited by: 9
Author(s): Sarah Morgan, Patricia M. Palagi, Pedro Fernandes, Eija Koperlainen, Jure Dimec, Diana Marek, Lee Larcombe, Gabriella Rustici, Teresa K. Attwood, Allegra Via
Software Mentions: 1
Published: about 7 years ago

10.1371/journal.pcbi.1008458

Ten simple rules for typographically appealing scientific texts
Cited by: 0
Author(s): Lars Ole Schwen
Software Mentions: 1
Published: almost 4 years ago

10.1093/beheco/arx003

Striving for transparent and credible research: practical guidelines for behavioral ecologists
Cited by: 46
Author(s): Malika Ihle, Isabel Winney, Anna Krystalli, Michael Croucher
Software Mentions: 1
Published: over 7 years ago