Ecosyste.ms: Papers
An open API service providing mapping between scientific papers and software projects that are mentioned in them.
All mentions data is based on the CZI Software Mentions dataset.
Papers: 10.1186/s12859-016-1241-0
https://doi.org/10.1186/s12859-016-1241-0
Cited by: 148
Author(s): Tyler W. H. Backman, Thomas Girke
Published: over 7 years ago
Software Mentions 19
bioconductor: BiocParallel
Bioconductor facilities for parallel evaluationPapers that mentioned: 30
bioconductor: DESeq2
Differential gene expression analysis based on the negative binomial distributionPapers that mentioned: 9,583
bioconductor: edgeR
Empirical Analysis of Digital Gene Expression Data in RPapers that mentioned: 6,568
bioconductor: GenomicAlignments
Representation and manipulation of short genomic alignmentsPapers that mentioned: 134
bioconductor: GenomicRanges
Representation and manipulation of genomic intervalsPapers that mentioned: 323
bioconductor: Rsamtools
Binary alignment (BAM), FASTA, variant call (BCF), and tabix file importPapers that mentioned: 138
bioconductor: Rsubread
Mapping, quantification and variant analysis of sequencing dataPapers that mentioned: 331
bioconductor: systemPipeR
systemPipeR: workflow management and report generation environmentPapers that mentioned: 27
bioconductor: VariantTools
Tools for Exploratory Analysis of Variant CallsPapers that mentioned: 15
pypi: bcbio-nextgen
Best-practice pipelines for fully automated high throughput sequencing analysisPapers that mentioned: 43