Ecosyste.ms: Papers
An open API service providing mapping between scientific papers and software projects that are mentioned in them.
All mentions data is based on the CZI Software Mentions dataset.
Projects: cran: RAP
https://packages.ecosyste.ms/registries/cran.r-project.org/packages/RAP
Reversal Association Pattern
2 versions
Latest release: over 11 years ago
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Papers Mentioning RAP 118
10.1186/s12859-016-1241-0
systemPipeR: NGS workflow and report generation environmentCited by: 148
Author(s): Tyler W. H. Backman, Thomas Girke
Software Mentions: 19
Published: over 8 years ago
10.1016/j.molcel.2021.05.023
Global analysis of protein-RNA interactions in SARS-CoV-2-infected cells reveals key regulators of infectionCited by: 87
Author(s): Wael Kamel, Marko Noerenberg, Berati Cerikan, Honglin Chen, Aino I Järvelin, Mohamed Kammoun, Young Seok Lee, Shuai Ni, Manuel García-Moreno, Anna Andrejeva, Michael J. Deery, Natasha Johnson, Christopher J Neufeldt, Mirko Cortese, Michael Knight, Kathryn S. Lilley, Javier Martı̂nez, Ilan Davis, Ralf Bartenschlager, Shabaz Mohammed, Alfredo Castelló
Software Mentions: 18
Published: over 3 years ago
10.1371/journal.pone.0189789
An integrative framework to reevaluate the Neotropical catfish genus Guyanancistrus (Siluriformes: Loricariidae) with particular emphasis on the Guyanancistrus brevispinis complexCited by: 11
Author(s): Sonia Fisch-Muller, Jan H. Mol, Raphaël Covain
Software Mentions: 16
Published: almost 7 years ago
10.1155/2016/7972351
Advancements in RNASeqGUI towards a Reproducible Analysis of RNA-Seq ExperimentsCited by: 11
Author(s): Francesco Russo, Dario Righelli, Claudia Angelini
Software Mentions: 11
Published: almost 9 years ago
10.1186/s12859-021-04211-7
RNAdetector: a free user-friendly stand-alone and cloud-based system for RNA-Seq data analysisCited by: 6
Author(s): Alessandro La Ferlita, Salvatore Alaimo, Sebastiano Di Bella, Emanuele Martorana, Georgios I. Laliotis, Francesco Bertoni, Luciano Cascione, Philip N. Tsichlis, Alfredo Ferro, Roberta Bosotti, Alfredo Pulvirenti
Software Mentions: 10
Published: over 3 years ago
10.1186/1471-2164-16-S6-S3
RAP: RNA-Seq Analysis Pipeline, a new cloud-based NGS web applicationCited by: 54
Author(s): Mattia D’Antonio, Paolo D’Onorio De Meo, Matteo Pallocca, Ernesto Picardi, Anna Maria D’Erchia, Raffaele Calogero, Tiziana Castrignanò, Graziano Pesole
Software Mentions: 9
Published: over 9 years ago
10.1186/1471-2105-10-364
multiplierz: an extensible API based desktop environment for proteomics data analysisCited by: 63
Author(s): Jignesh R. Parikh, Manor Askenazi, Scott B. Ficarro, Tanya Cashorali, James T. Webber, Nathaniel C. Blank, Yi Zhang, Jarrod A. Marto
Software Mentions: 6
Published: about 15 years ago
10.1186/s13015-014-0027-z
BicPAM: Pattern-based biclustering for biomedical data analysisCited by: 57
Author(s): Rui Henriques, Sara C. Madeira
Software Mentions: 5
Published: about 10 years ago
10.1371/journal.pntd.0003284
Improvements on Restricted Insecticide Application Protocol for Control of Human and Animal African Trypanosomiasis in Eastern UgandaCited by: 30
Author(s): Dennis Muhanguzi, Kim Picozzi, Jan Hatendorf, Michael Thrusfield, Susan C. Welburn, John David Kabasa, Charles Waiswa
Software Mentions: 5
Published: about 10 years ago
10.1186/s13059-019-1880-3
PIRCh-seq: functional classification of non-coding RNAs associated with distinct histone modificationsCited by: 17
Author(s): Jingwen Fang, Qing Ma, Constance R. Chu, Beibei Huang, Lingjie Li, Pengfei Cai, Pedro J. Batista, Karen Tolentino, Jin Xu, Rui Li, Pengcheng Du, Kun Qu, Howard Y. Chang
Software Mentions: 4
Published: about 5 years ago
10.1186/1472-6807-9-28
Improving consensus contact prediction via server correlation reductionCited by: 27
Author(s): Xin Gao, Dongbo Bu, Jinbo Xu, Ming Li
Software Mentions: 4
Published: over 15 years ago
10.1002/ece3.7760
Balancing selection, genetic drift, and human‐mediated introgression interplay to shape MHC (functional) diversity in Mediterranean brown troutCited by: 6
Author(s): Lorenzo Talarico, Silvio Marta, Anna Rita Rossi, Simone Di Crescenzo, Gerardo Petrosino, Marco Martinoli, Lorenzo Tancioni
Software Mentions: 4
Published: over 3 years ago
10.1038/s41598-020-75270-8
Raw transcriptomics data to gene specific SSRs: a validated free bioinformatics workflow for biologistsCited by: 8
Author(s): D. N. U. Naranpanawa, C. H. W. M. R. B. Chandrasekara, P. C. G. Bandaranayake, Asitha U. Bandaranayake
Software Mentions: 4
Published: about 4 years ago
10.1186/s12859-020-03565-8
ELIXIR-IT HPC@CINECA: high performance computing resources for the bioinformatics communityCited by: 22
Author(s): Tiziana Castrignanò, Silvia Gioiosa, Tiziano Flati, Mirko Cestari, Ernesto Picardi, Matteo Chiara, Maddalena Fratelli, Stefano Amente, Marco Cirilli, M. A. Tangaro, Giovanni Chillemi, Graziano Pesole, Federico Zambelli
Software Mentions: 4
Published: over 4 years ago
10.1186/1471-2105-8-148
primetv: a viewer for reconciled treesCited by: 25
Author(s): Bengt Sennblad, Eva Schreil, Ann-Charlotte Berglund Sonnhammer, Jens Lagergren, Lars Arvestad
Software Mentions: 4
Published: over 17 years ago
10.1093/gigascience/giy125
A benchmark study of k-mer counting methods for high-throughput sequencingCited by: 43
Author(s): Swati Manekar, S. R. Sathe
Software Mentions: 4
Published: about 6 years ago
10.1186/s13012-016-0428-0
Proceedings of the 3rd Biennial Conference of the Society for Implementation Research Collaboration (SIRC) 2015: advancing efficient methodologies through community partnerships and team scienceCited by: 25
Author(s): Cara C. Lewis, Doyanne Darnell, Suzanne E. U. Kerns, Maria Monroe-DeVita, Sara J. Landes, Aaron R. Lyon, Cameo Stanick, Shannon Dorsey, Jill Locke, Brigid R. Marriott, Ajeng J. Puspitasari, Caitlin N. Dorsey, Karin S. Hendricks, Andria Pierson, Phil Fizur, Katherine Anne Comtois, Lawrence A. Palinkas, Patricia Chamberlain, Gregory A. Aarons, Amy E. Green, Mark G. Ehrhart, Elise M. Trott, Cathleen E. Willging, María E. Fernández, Nicholas H. Woolf, Shuting Liang, Natalia I. Heredia, Michelle C. Kegler, Betsy Risendal, Andrea Dwyer, Vicki Young, Dayna Campbell, Michelle Carvalho, Yvonne Kellar‐Guenther, Laura J. Damschroder, Julie C. Lowery, Sarah S. Ono, Kathleen F. Carlson, Erika Cottrell, Maya O’Neil, Travis L. Lovejoy, Joanna J. Arch, Jill Mitchell, Cara C. Lewis, Brigid R. Marriott, Kelli Scott, Jennifer Schurer Coldiron, Eric J. Bruns, Alyssa N. Hook, Benjamin C. Graham, Katelin Jordan, Rochelle F. Hanson, Angela D. Moreland, Benjamin E. Saunders, Heidi S. Resnick, Shannon Wiltsey Stirman, Cassidy A. Gutner, Jennifer M. Gamarra, Dawne Vogt, Michael K. Suvak, Jennifer Schuster Wachen, Katherine A. Dondanville, Jeffrey S. Yarvis, Jim Mintz, Alan L. Peterson, Elisa V. Borah, Brett T. Litz, Alma Molino, Stacey Young McCaughan, Patricia A. Resick, Nancy Pandhi, Nora Jacobson, Neftali Serrano, Armando del Río Hernández, Elizabeth Zeidler Schreiter, Natalie Wietfeldt, Zaher Karp, Michael D. Pullmann, Barbara A. Lucenko, Bridget Pavelle, Jacqueline A. Uomoto, Andrea Negrete, Molly Cevasco, Robert P. Franks, Christopher T. Bory, Edward J. Miech, Teresa M. Damush, Jason M. Satterfield, Derek D. Satre, Maria Wamsley, Patrick Yuan, Patricia O’Sullivan, Helen Best, Susan Velasquez, Miya L. Barnett, Lauren Brookman‐Frazee, Jennifer Regan, Nicole A. Stadnick, Alison B. Hamilton, Anna S. Lau, Scott C. Roesch, Byron J. Powell, Thomas J. Waltz, Matthew Chinman, Laura J. Damschroder, Jeffrey L. Smith, Monica M. Matthieu, Enola K. Proctor, JoAnn E. Kirchner, Craig S. Rosen, Sarah Cusworth Walker, Asia S. Bishop, Mariko Lockhart, Allison L. Rodriguez, Luisa Manfredi, Andrea Nevedal, Joel Rosenthal, Daniel M. Blonigen, Anne M. Mauricio, Thomas D. Dishion, Jenna Rudo-Stern, Justin D. Smith, Courtney Benjamin Wolk, Colleen Harker, Anne Olsen, Travis Shingledecker, Frances K. Barg, David S. Mandell, Rinad S. Beidas, Marissa C. Hansen, María P. Aranda, Isabel Torres-Vigil, Bryan Hartzler, Bradley Steinfeld, Tory Gildred, Zandrea Harlin, Fredric Shephard, Matthew Ditty, Andrea Doyle, John A. Bickel, Katharine Cristaudo, Dan Fox, Sonia Combs, David H. Lischner, Richard A. Van Dorn, Stephen Tueller, Jesse Hinde, Georgia Karuntzos, Roselyn Peterson, Lucy Berliner, Laura Murray, Yevgeny Botanov, Beverly Kikuta, Tianying Chen, Marivi Navarro-Haro, Anthony P. DuBose, Kathryn E. Korslund, Marsha M. Linehan, Elizabeth A. Karp, Sarah Edmunds, Lisa V. Ibañez, Wendy L. Stone, Jack H. Andrews, Benjamin D. Johnides, Estee M. Hausman, Kristin M. Hawley, Beth Prusaczyk, Alex Ramsey, Ana A. Baumann, Graham A. Colditz, Mimi Choy-Brown, Rosemary D. Meza, Georganna Sedlar, Leah Lucid, Nelson O. O. Zounlome, Candice M. Monson, Norman Shields, Marta Mastlej, Meredith S. H. Landy, Jeanine E. M. Lane, Natalie K. Finn, Elisa M. Torres, Carol A. Malte, Aline Lott, Andrew J. Saxon, Meredith Boyd, Jennifer Pierce, Agathe Lorthios-Guilledroit, Lucie Richard, Johanne Filiatrault, Kevin A. Hallgren, Shirley M. Crotwell, Rosa María López-Pintor Muñoz, Becky K. Gius, Benjamin O. Ladd, Barbara S. McCrady, Elizabeth G. Epstein, John D. Clapp, Danielle E. Ruderman, Melanie Barwick, Raluca Barac, Stanley Zlotkin, Laila Salim, Marnie Davidson, Alicia C. Bunger, Hillary A. Robertson, Christopher Botsko, Brandy N. Smith, Lindsay R. Trent, Melanie S. Harned, André Ivanoff, Antonio R. Garcia, Minseop Kim, Lonnie R. Snowden, John Landsverk, Annika C. Sweetland, Maria José G. Fernandes, Edilson Lima dos Santos, Cristiane S. Duarte, Afrânio Lineu Kritski, Noa Krawczyk, Caitlin Nelligan, Milton L. Wainberg, David H. Sommerfeld, Benjamin H. Chi, Echezona E. Ezeanolue, Rachel Sturke, Lydia Kline, Laura Guay, George K. Siberry, Ian M. Bennett, Rachel Gold, Johnny Mao, Diane Powers, Mindy Vredevoogd, Jürgen Unützer, Jennifer Schroeder, Lane E. Volpe, Julie Steffen, Nathaniel Jungbluth, Kelly Thompson, Eliza Segell, Pearl McGee-Vincent, Naian Liu, Robyn D. Walser, Jennifer J. Runnals, Robert Shaw, Craig S. Rosen, Janet Schmidt, Patrick S. Calhoun, Ruth Varkovitzky, Amy Drahota, Jonathan I. Martinez, Brigitte Brikho, Aubyn C. Stahmer, Anna Williamson, Ronnie M. Rubin, Matthew O. Hurford, Shawna Weaver, Arthur C. Evans, Rebecca E. Stewart, Samantha L. Matlin, Shawna Weaver, Trevor R. Hadley, Donald R. Gerke, Ericka M. Lewis, Jenna McWilliam, Jacquie Brown, Michelle Tucker, Kathleen Conte, Abigail Melvin, Freda F. Liu, Amelia Kotte, Kaitlin A. Hill, Albert C. Mah, Priya Korathu-Larson, Janelle R. Au, Sonia C. Izmirian, Scott S. Keir, Brad J. Nakamura, Charmaine K. Higa-McMillan, Brittany Rhoades Cooper, Angie Funaiole, Eleanor Dizon, Eric J. Hawkins, Hildi Hagedorn, Douglas Berger, Anissa Frank, Carol E. Achtmeyer, Anthony J. Mariano, Kate Wolitzky-Taylor, Richard A. Rawson, Richard K. Ries, Peter Roy‐Byrne, Michelle G. Craske, Dena N. Simmons, Catalina Torrente, Lori Nathanson, Grace Carroll, Kimbree Brown, Karina Ramos, Nicole Thornton, Elizabeth A. Stormshak, Daniel S. Shaw, Melvin N. Wilson, Emmy Tiderington, Bikki Tran Smith, Deborah K. Padgett, Marilyn L. Ray, Abraham Wandersman, Andrea Lamont, Gordon Hannah, Kassandra A. Alia, Lisa Saldana, Holle Schaper, Mark Campbell, Valerie B. Shapiro, B.K. Elizabeth Kim, Jennifer L. Fleming, Paul A. LeBuffe, Bryan J. Weiner, Heather M. Halko
Software Mentions: 4
Published: over 8 years ago
10.1186/s12864-018-4528-x
A systematic approach to RNA-associated motif discoveryCited by: 14
Author(s): Tian Gao, Jiang Shu, Juan Cui
Software Mentions: 3
Published: almost 7 years ago
10.1002/ece3.7228
Nesting, brood rearing, and summer habitat selection by translocated greater sage‐grouse in North Dakota, USACited by: 4
Author(s): Kade D. Lazenby, Peter S. Coates, Shawn T. O’Neil, Michel T. Kohl, David K. Dahlgren
Software Mentions: 3
Published: almost 4 years ago
10.1186/1743-0003-5-25
Review on solving the inverse problem in EEG source analysisCited by: 848
Author(s): Reuben Grech, Tracey A. Cassar, Joseph Muscat, Tracey A. Camilleri, Simon G. Fabri, Michalis Zervakis, Petros Xanthopoulos, Vangelis Sakkalis, Bart Vanrumste
Software Mentions: 3
Published: about 16 years ago
10.1111/jcmm.13238
State of the art technologies to explore long non-coding RNAs in cancerCited by: 57
Author(s): Saeede Salehi, Mohammad Taheri, Negar Azarpira, Abdolhossein Zare, Abbas Behzad-Behbahani
Software Mentions: 3
Published: over 7 years ago
10.1186/1471-2105-12-98
CDAO-Store: Ontology-driven Data Integration for Phylogenetic AnalysisCited by: 20
Author(s): Brandon Chisham, Ben Wright, Hieu Giang Le, Tran Cao Son, Enrico Pontelli
Software Mentions: 3
Published: over 13 years ago
10.1186/s13059-021-02377-0
Using high-throughput multiple optical phenotyping to decipher the genetic architecture of maize drought toleranceCited by: 40
Author(s): Xi Wu, Hui Feng, Di Wu, Shijuan Yan, Pei Zhang, Wenbin Wang, Jun Zhang, Junli Ye, Guoxin Dai, Fan Yu, Weikun Li, Baoxing Song, Zedong Geng, Wanli Yang, Guoxin Chen, Feng Qin, William Terzaghi, Michelle C. Stitzer, Li Lin, Lizhong Xiong, Jianbing Yan, Edward S. Buckler, Wanneng Yang, Mingqiu Dai
Software Mentions: 3
Published: over 3 years ago
10.1007/s00236-015-0254-x
Compositional schedulability analysis of real-time actor-based systemsCited by: 4
Author(s): Mohammad Mahdi Jaghoori, Frank de Boer, Delphine Longuet, Tom Chothia, Marjan Sirjani
Software Mentions: 2
Published: almost 9 years ago
10.1186/1471-2105-16-S9-S1
Preface: BITS2014, the annual meeting of the Italian Society of BioinformaticsCited by: 0
Author(s): Angelo Facchiano, Claudia Angelini, Roberta Bosotti, Alessandro Guffanti, Anna Marabotti, Roberto Marangoni, Stefano Pascarella, Paolo Romano, Andreas Zanzoni, Manuela Helmer-Citterich
Software Mentions: 2
Published: over 9 years ago
10.1186/1471-2105-9-18
LTRharvest, an efficient and flexible software for de novo detection of LTR retrotransposonsCited by: 985
Author(s): David Ellinghaus, Stefan Kurtz, Ute Willhoeft
Software Mentions: 2
Published: almost 17 years ago
10.1186/1471-2105-7-398
PhyloPat: phylogenetic pattern analysis of eukaryotic genesCited by: 16
Author(s): Tim Hulsen, Jacob de Vlieg, Peter M.A. Groenen
Software Mentions: 2
Published: over 18 years ago
10.1186/1471-2105-12-S12-S1
Discovery of error-tolerant biclusters from noisy gene expression dataCited by: 20
Author(s): Rohit Gupta, Navneet Rao, Vipin Kumar
Software Mentions: 2
Published: about 13 years ago
10.1186/s12862-020-01642-3
Phylogenetic and spatial distribution of evolutionary diversification, isolation, and threat in turtles and crocodilians (non-avian archosauromorphs)Cited by: 32
Author(s): Timothy J. Colston, Pallavi Kulkarni, Walter Jetz, R. Alexander Pyron
Software Mentions: 2
Published: over 4 years ago
10.1186/1472-6947-7-3
A UMLS-based spell checker for natural language processing in vaccine safetyCited by: 26
Author(s): Herman D. Tolentino, Michael D. Matters, Wikke Walop, Barbara Law, Wesley Tong, Fang Liu, Paul Fontelo, Katrin Kohl, Daniel C. Payne
Software Mentions: 2
Published: almost 18 years ago
10.1186/1472-6947-12-6
Recommended practices for computerized clinical decision support and knowledge management in community settings: a qualitative studyCited by: 81
Author(s): Joan S. Ash, Dean F. Sittig, Kenneth P. Guappone, Richard H. Dykstra, Joshua E. Richardson, Adam Wright, James Carpenter, Carmit K. McMullen, Michael D. Shapiro, Arwen Bunce, Blackford Middleton
Software Mentions: 2
Published: almost 13 years ago
10.1186/s13017-016-0078-1
Wells criteria for DVT is a reliable clinical tool to assess the risk of deep venous thrombosis in trauma patientsCited by: 59
Author(s): Shrey Modi, Ryan Deisler, Karen Gozel, Patty Reicks, Eric D. Irwin, Melissa E. Brunsvold, Kaysie Banton, Greg J. Beilman
Software Mentions: 2
Published: over 8 years ago
10.3897/zookeys.1001.58447
Recognition and revision of the Phelister blairi group (Histeridae, Histerinae, Exosternini)Cited by: 2
Author(s): Michael S. Caterino, Alexey K. Tishechkin
Software Mentions: 2
Published: about 4 years ago
10.1371/currents.RRN1213
Hal: an Automated Pipeline for Phylogenetic Analyses of Genomic DataCited by: 51
Author(s): Barbara Robbertse, Ryan J. Yoder, Alexander Boyd, John Reeves, Joseph W. Spatafora
Software Mentions: 2
Published: almost 14 years ago
10.1371/journal.pone.0044439
Harmony: EEG/MEG Linear Inverse Source Reconstruction in the Anatomical Basis of Spherical HarmonicsCited by: 20
Author(s): Yury Petrov
Software Mentions: 2
Published: about 12 years ago
10.1371/journal.pone.0096946
Genome-Wide Transcriptome Analysis Reveals that Cadmium Stress Signaling Controls the Expression of Genes in Drought Stress Signal Pathways in RiceCited by: 93
Author(s): Youko Oono, Takayuki Yazawa, Yoshihiro Kawahara, Hajime Kanamori, Fuminori Kobayashi, Harumi Sasaki, Satomi Mori, Jianzhong Wu, Hirokazu Handa, Takeshi Itoh, Takashi Matsumoto
Software Mentions: 2
Published: over 10 years ago
10.1371/journal.pone.0201596
Cost-minimizing team hires with participation constraintCited by: 0
Author(s): Hui Sun, Jianbin Huang, Ke Liu, Mengjie Wan, Yu Zhou, Chen Cao, Xiaolin Jia, Liang He
Software Mentions: 2
Published: over 6 years ago
10.12688/f1000research.13522.2
Purine-rich low complexity regions are potential RNA binding hubs in the human genomeCited by: 6
Author(s): Ivan Antonov, Yulia A. Medvedeva
Software Mentions: 2
Published: over 5 years ago
10.3389/fnins.2020.601402
Prefrontal Asymmetry BCI Neurofeedback DatasetsCited by: 6
Author(s): Fred Charles, Caio De Castro Martins, Marc Cavazza
Software Mentions: 2
Published: about 4 years ago
10.3389/fpls.2016.01914
A Meta-Analysis Based Method for Prioritizing Candidate Genes Involved in a Pre-specific FunctionCited by: 12
Author(s): Jingjing Zhai, Yunjia Tang, Hao Yuan, Longteng Wang, Haoli Shang, Chuang Ma
Software Mentions: 2
Published: about 8 years ago
10.3389/frobt.2021.577770
Exploring Co-creative Drawing WorkflowsCited by: 4
Author(s): Chipp Jansen, Elizabeth Sklar
Software Mentions: 2
Published: over 3 years ago
10.1590/S1415-47572009005000096
Clonal diversity and conservation genetics of the medicinal plant Carapichea ipecacuanha (Rubiaceae)Cited by: 23
Author(s): Luiz Orlando de Oliveira, Bruna Afonso Venturini, Ana Aparecida Bandini Rossi, Saulo Santos Hastenreiter
Software Mentions: 2
Published: about 15 years ago
10.1186/1939-8433-6-4
Improvement of the Oryza sativa Nipponbare reference genome using next generation sequence and optical map dataCited by: 1,492
Author(s): Yoshihiro Kawahara, M. de la Bastide, John Hamilton, Hajime Kanamori, W. Richard McCombie, Shuai Ouyang, David C. Schwartz, Tsuyoshi Tanaka, Jianzhong Wu, Shiguo Zhou, Kevin L. Childs, Rebecca M. Davidson, Haining Lin, Lina M. Quesada‐Ocampo, Brieanne Vaillancourt, Hiroaki Sakai, Sung Shin Lee, Jungsok Kim, Hisataka Numa, Takeshi Itoh, C. Robin Buell, Takashi Matsumoto
Software Mentions: 2
Published: almost 12 years ago
10.1038/s41598-019-52162-0
Structure Based Multitargeted Molecular Docking Analysis of Selected Furanocoumarins against Breast CancerCited by: 78
Author(s): Reetuparna Acharya, Shinu Chacko, Pritha Bose, Antonio Lapenna, Shakti Prasad Pattanayak
Software Mentions: 2
Published: about 5 years ago
10.3390/s141224046
A Survey of Middleware for Sensor and Network VirtualizationCited by: 25
Author(s): Zubair Khalid, Norsheila Fisal, Mohd. Rozaini
Software Mentions: 2
Published: about 10 years ago
10.3390/s18051556
A Personalized QoS Prediction Approach for CPS Service Recommendation Based on Reputation and Location-Aware Collaborative FilteringCited by: 48
Author(s): Li Kuang, Yu Long, Lan Huang, Yin Wang, Pengju Ma, Chuanbin Li, Yujia Zhu
Software Mentions: 2
Published: over 6 years ago
10.1007/s11625-017-0462-0
Applying the robust adaptation planning (RAP) framework to Ghana’s agricultural climate change adaptation regimeCited by: 8
Author(s): Abrar Chaudhury, Philip K. Thornton, Ariella Helfgott, Chase Sova
Software Mentions: 2
Published: over 7 years ago
10.1186/s13046-017-0497-1
Che-1 sustains hypoxic response of colorectal cancer cells by affecting Hif-1α stabilizationCited by: 24
Author(s): Tiziana Bruno, Mariacristina Valerio, Luca Casadei, Francesca De Nicola, Frauke Goeman, Matteo Pallocca, Valeria Catena, Simona Iezzi, Cristina Socolovschi, Agata Desantis, Cesare Manetti, Giovanni Blandino, Aristide Floridi, Maurizio Fanciulli
Software Mentions: 2
Published: almost 8 years ago
10.1186/s13045-018-0673-6
Long non-coding RNAs in hematological malignancies: translating basic techniques into diagnostic and therapeutic strategiesCited by: 30
Author(s): Nonthaphat Kent Wong, Chien‐Ling Huang, Rabiul Islam, Shea Ping Yip
Software Mentions: 2
Published: about 6 years ago
10.3390/ijerph110605951
A Qualitative Process Evaluation of Classroom-Based Cognitive Behaviour Therapy to Reduce Adolescent DepressionCited by: 18
Author(s): John Taylor, Rhiannon Phillips, Ellen Piel Cook, Lucy Georgiou, Paul Stallard, Kapil Sayal
Software Mentions: 2
Published: over 10 years ago
10.3390/ijerph110807678
Assessing Program Efficiency: A Time and Motion Study of the Mental Health Emergency Care — Rural Access Program in NSW AustraliaCited by: 19
Author(s): Emily Saurman, David Lyle, Sue Kirby, Russell Roberts
Software Mentions: 2
Published: over 10 years ago
10.7554/eLife.40037
The RNA interactome of human telomerase RNA reveals a coding-independent role for a histone mRNA in telomere homeostasisCited by: 12
Author(s): Roland Iványi-Nagy, Syed Moiz Ahmed, Sabrina Peter, Priya Dharshana Ramani, P.P. Ong, Oliver Dreesen, Peter Dröge
Software Mentions: 2
Published: about 6 years ago
10.7554/eLife.23244
Prosurvival long noncoding RNA PINCR regulates a subset of p53 targets in human colorectal cancer cells by binding to Matrin 3Cited by: 67
Author(s): Ritu Chaudhary, Berkley E. Gryder, Wendy S. Woods, Subramanian Mahadevan, Michael R. Jones, Xiao Ling Li, Lisa M. Miller Jenkins, Svetlana A. Shabalina, Min Mo, Mary Dasso, Yuan Yang, Lalage M. Wakefield, Yuelin J. Zhu, Susan M Frier, Branden S. Moriarity, Kannanganattu V. Prasanth, Pablo Pérez-Piñera, Ashish Lal
Software Mentions: 2
Published: over 7 years ago
10.3390/ijms21113828
CSI NGS Portal: An Online Platform for Automated NGS Data Analysis and SharingCited by: 16
Author(s): Ömer An, Kian-Lee Tan, Ying Li, Jia Li, Chan-Shuo Wu, Bin Zhang, Leilei Chen, Henry Yang
Software Mentions: 2
Published: over 4 years ago
10.18632/oncotarget.7978
Multitargeting activity of miR-24 inhibits long-term melatonin anticancer effectsCited by: 49
Author(s): Federica Mori, Maria Ferraiuolo, Raffaela Santoro, Andrea Sacconi, Frauke Goeman, Matteo Pallocca, Claudio Pulito, Etleva Korita, Maurizio Fanciulli, Paola Muti, Giovanni Blandino, Sabrina Strano
Software Mentions: 2
Published: almost 9 years ago
10.18632/oncotarget.12060
Deptor transcriptionally regulates endoplasmic reticulum homeostasis in multiple myeloma cellsCited by: 19
Author(s): Valeria Catena, Tiziana Bruno, Francesca De Nicola, Frauke Goeman, Matteo Pallocca, Simona Iezzi, Cristina Socolovschi, Giovanni Cigliana, Aristide Floridi, Giovanni Blandino, Maurizio Fanciulli
Software Mentions: 2
Published: over 8 years ago
10.1371/journal.pone.0172269
DNApod: DNA polymorphism annotation database from next-generation sequence read archivesCited by: 2
Author(s): Takako Mochizuki, Yasuhiro Tanizawa, Takatomo Fujisawa, Toshio Ohta, Naruo Nikoh, Tokurou Shimizu, Atsushi Toyoda, Asao Fujiyama, Nori Kurata, Hideki Nagasaki, Eli Kaminuma, Yasukazu Nakamura
Software Mentions: 1
Published: almost 8 years ago
10.1371/journal.pone.0170195
A Global User-Driven Model for Tile Prefetching in Web Geographical Information SystemsCited by: 8
Author(s): Shaoming Pan, Yanwen Chong, Hang Zhang, Xicheng Tan
Software Mentions: 1
Published: almost 8 years ago
10.1002/advs.202001918
Multifunctional Nanostructure RAP‐RL Rescues Alzheimer's Cognitive Deficits through Remodeling the Neurovascular UnitCited by: 4
Author(s): Qian Zhang, Qing Song, Xiao Gu, Mengna Zheng, Antian Wang, Gan Jiang, Meng Huang, Huan Chen, Yu Qiu, Bin Bo, Shanbao Tong, Rong Shao, Binyin Li, Gang Wang, Hao Wang, Yongbo Hu, Hongzhuan Chen, Xiaoling Gao
Software Mentions: 1
Published: about 4 years ago
10.3390/ijerph110505541
A Qualitative Investigation of Adolescents’ Perceived Mechanisms of Change from a Universal School-Based Depression Prevention ProgramCited by: 16
Author(s): Ian M. Shochet, Roslyn Montague, Coral L. Smith, Mark R. Dadds
Software Mentions: 1
Published: over 10 years ago
10.1186/s13578-015-0050-x
Unveiling the hidden function of long non-coding RNA by identifying its major partner-proteinCited by: 79
Author(s): Yanmin Yang, Liwei Wen, Hongliang Zhu
Software Mentions: 1
Published: about 9 years ago
10.3390/cells10071786
GSI Treatment Preserves Protein Synthesis in C2C12 MyotubesCited by: 0
Author(s): Joshua R. Huot, Brian Thompson, Charlotte McMullen, Joseph Marino, Susan T. Arthur
Software Mentions: 1
Published: over 3 years ago
10.1186/s13034-015-0066-3
Parents of youth who self-injure: a review of the literature and implications for mental health professionalsCited by: 62
Author(s): Alexis E. Arbuthnott, Stephen P. Lewis
Software Mentions: 1
Published: about 9 years ago
10.1101/sqb.2019.84.039222
Mechanistic Dissection of RNA-Binding Proteins in Regulated Gene Expression at Chromatin LevelsCited by: 4
Author(s): Jiayu Chen, Do Hwan Lim, Xiang‐Dong Fu
Software Mentions: 1
Published: almost 6 years ago
10.1155/2012/402341
Localizing True Brain Interactions from EEG and MEG Data with Subspace Methods and Modified BeamformersCited by: 14
Author(s): Forooz Shahbazi Avarvand, Arne Ewald, Guido Nolte
Software Mentions: 1
Published: almost 13 years ago
10.1007/s10994-013-5346-7
Using random forests to diagnose aviation turbulenceCited by: 79
Author(s): John K. Williams
Software Mentions: 1
Published: over 11 years ago
10.3390/biom10081160
Single and Combined Methods to Specifically or Bulk-Purify RNA–Protein ComplexesCited by: 10
Author(s): Roosje Van Ende, Sam Balzarini, Koen Geuten
Software Mentions: 1
Published: over 4 years ago
10.3390/e21030324
Efficient Algorithms for Coded Multicasting in Heterogeneous Caching NetworksCited by: 5
Author(s): Giuseppe Vettigli, Mingyue Ji, Karthikeyan Shanmugam, Jaime Llorca, Antonia M. Tulino, Giuseppe Caire
Software Mentions: 1
Published: almost 6 years ago
10.1007/s00267-017-0870-z
Transcending Landscapes: Working Across Scales and Levels in Pastoralist Rangeland GovernanceCited by: 18
Author(s): Lance W. Robinson, Enoch Ontiri, Tsegaye Alemu, Stephen S. Moiko
Software Mentions: 1
Published: over 7 years ago
10.1186/s13023-019-1139-9
RD-RAP: beyond rare disease patient registries, devising a comprehensive data and analytic frameworkCited by: 20
Author(s): M. Bellgard, Tom Snelling, James McGree
Software Mentions: 1
Published: over 5 years ago
10.3389/fgene.2021.668313
Epigenetic Regulation of the Vascular Endothelium by Angiogenic LncRNAsCited by: 3
Author(s): Noeline Subramaniam, Ranju Nair, Philip A. Marsden
Software Mentions: 1
Published: over 3 years ago
10.3389/fgene.2020.00186
Target of Rapamycin Regulates Genome Methylation Reprogramming to Control Plant Growth in ArabidopsisCited by: 19
Author(s): Tingting Zhu, Linxuan Li, Li Feng, Huijuan Mo, Maozhi Ren
Software Mentions: 1
Published: almost 5 years ago
10.3389/fmicb.2019.00501
Functional Characterization of Target of Rapamycin Signaling in Verticillium dahliaeCited by: 17
Author(s): Linxuan Li, Tingting Zhu, Yun Song, Xiumei Luo, Li Feng, Fei Zhuo, Fuguang Li, Maozhi Ren
Software Mentions: 1
Published: almost 6 years ago
10.3389/fmolb.2017.00045
Probing Long Non-coding RNA-Protein InteractionsCited by: 27
Author(s): Jasmine Barra, Eleonora Leucci
Software Mentions: 1
Published: over 7 years ago
10.3390/s19224944
Power Efficient Random Access for Massive NB-IoT ConnectivityCited by: 13
Author(s): Mamta Agiwal, Mukesh Kumar Maheshwari, Hu Jin
Software Mentions: 1
Published: about 5 years ago
10.3389/fphys.2019.01218
Rapid Atrial Pacing Promotes Atrial Fibrillation Substrate in Unanesthetized Instrumented RatsCited by: 14
Author(s): Wesam Mulla, Barak Hajaj, Sigal Elyagon, Michal Mor, Roni Gillis, Michael Murninkas, Hadar Klapper-Goldstein, Inbar Plaschkes, Vered Chalifa‐Caspi, Sharon Etzion, Yoram Etzion
Software Mentions: 1
Published: over 5 years ago
10.1186/s40064-016-2791-3
A two-hop based adaptive routing protocol for real-time wireless sensor networksCited by: 5
Author(s): Sandhya Rachamalla, Anitha Sheela Kancherla
Software Mentions: 1
Published: over 8 years ago
10.3389/fpls.2017.00402
LTRtype, an Efficient Tool to Characterize Structurally Complex LTR Retrotransposons and Nested Insertions on GenomesCited by: 8
Author(s): Fan-Chun Zeng, Yanjie Zhao, Que-Jie Zhang, Li‐Zhi Gao
Software Mentions: 1
Published: over 7 years ago
10.3389/fpsyt.2013.00025
Genealogy of instruments for prodrome evaluation of psychosisCited by: 28
Author(s): Jean-Gabriel Daneault, Émmanuel Stip
Software Mentions: 1
Published: almost 12 years ago
10.1007/s10488-018-0909-3
Rapid Assessment Procedure Informed Clinical Ethnography (RAPICE) in Pragmatic Clinical Trials of Mental Health Services Implementation: Methods and Applied Case StudyCited by: 74
Author(s): Lawrence A. Palinkas, Douglas Zatzick
Software Mentions: 1
Published: about 6 years ago
10.3389/fvets.2021.616865
Controlling Tsetse Flies and Ticks Using Insecticide Treatment of Cattle in Tororo District Uganda: Cost Benefit AnalysisCited by: 7
Author(s): Walter Okello, Ewan T. MacLeod, Dennis Muhanguzi, Charles Waiswa, Susan C. Welburn
Software Mentions: 1
Published: almost 4 years ago
10.3390/ijerph120504758
Where to Go from Here? An Exploratory Meta-Analysis of the Most Promising Approaches to Depression Prevention Programs for Children and AdolescentsCited by: 48
Author(s): Sarah Hetrick, Georgina Cox, Sally Merry
Software Mentions: 1
Published: over 9 years ago
10.1186/s12911-015-0156-4
Multiple perspectives on clinical decision support: a qualitative study of fifteen clinical and vendor organizationsCited by: 19
Author(s): Joan S. Ash, Dean F. Sittig, Carmit K. McMullen, Adam Wright, Arwen Bunce, Vishnu Mohan, Deborah J. Cohen, Blackford Middleton
Software Mentions: 1
Published: over 9 years ago
10.1186/s12913-015-0839-7
No longer ‘flying blind’: how access has changed emergency mental health care in rural and remote emergency departments, a qualitative studyCited by: 32
Author(s): Emily Saurman, Sue Kirby, David Lyle
Software Mentions: 1
Published: over 9 years ago
10.1186/1471-2164-8-286
Quantitative analysis of mutation and selection pressures on base composition skews in bacterial chromosomesCited by: 8
Author(s): Chen Chi, Carton W. Chen
Software Mentions: 1
Published: almost 18 years ago
10.1186/1471-2105-11-S3-S7
Detection of gene orthology from gene co-expression and protein interaction networksCited by: 18
Author(s): Fadi Towfic, Susan VanderPIas, Casey A OIiver, OIiver Couture, Christopher K TuggIe, M Heather West GreenIee, Vasant Honavar
Software Mentions: 1
Published: over 14 years ago
10.1186/s13012-020-0972-5
Adapting rapid assessment procedures for implementation research using a team-based approach to analysis: a case example of patient quality and safety interventions in the ICUCited by: 30
Author(s): Laura M. Holdsworth, Nadia Safaeinili, Marcy Winget, Karl Lorenz, Mary E. Lough, Steve Asch, Elizabeth Malcolm
Software Mentions: 1
Published: almost 5 years ago
10.1001/jamanetworkopen.2020.28477
Assessment of Posttraumatic Stress Disorder and Educational Achievement in SwedenCited by: 14
Author(s): Alba Vilaplana-Pérez, Anna Sidorchuk, Ana Pérez-Vigil, Gustaf Brander, Kayoko Isoumura, Eva Hesselmark, Laura Sevilla-Cermeño, Unnur Valdimarsdóttir, Huan Song, Andreas Jangmo, Ralf Kuja‐Halkola, Brian M. D’Onofrio, Henrik Larsson, Gemma García‐Soriano, David Mataix‐Cols, Lorena Fernández de la Cruz
Software Mentions: 1
Published: about 4 years ago
10.1002/acm2.12031
Maximizing the cost benefit of physics residency interviewCited by: 1
Author(s): Justus Adamson, Sonja Dieterich, Yi Rong
Software Mentions: 1
Published: almost 8 years ago
10.1186/1471-2105-10-S6-S3
Databases of homologous gene families for comparative genomicsCited by: 128
Author(s): Simon Penel, Anne-Muriel Arigon, Jean-François Dufayard, Anne-Sophie Sertier, Vincent Daubin, Laurent Duret, Manolo Gouy, Guy Perrière
Software Mentions: 1
Published: over 15 years ago
10.1172/JCI93910
Circadian clock component REV-ERBα controls homeostatic regulation of pulmonary inflammationCited by: 139
Author(s): Marie Pariollaud, Julie Gibbs, Thomas Hopwood, Sheila Brown, Nicola Begley, Ryan Vonslow, Toryn Poolman, Baoqiang Guo, Ben Saer, D. Heulyn Jones, James P. Tellam, Stefano Bresciani, Nicholas C. O. Tomkinson, Justyna Wojno-Picon, Anthony W. J. Cooper, Dion A. Daniels, Ryan P. Trump, Daniel Grant, William J. Zuercher, Timothy M. Willson, Andrew S. MacDonald, Brian Bolognese, Patricia L. Podolin, Yolanda Sánchez, A. S. I. Loudon, David Ray
Software Mentions: 1
Published: over 6 years ago
10.1186/1939-8433-5-3
Nomenclature report on rice WRKY's - Conflict regarding gene names and its solutionCited by: 38
Author(s): Qi Shen, Diqiu Yu, Jong Seong Jeon, Pietro Piffanelli, Pamela Abbruscato, Ze Jian Guo, Yuanji Zhang, Takeshi Itoh, Sung S. Lee, C. Robin Buell, Yasuo Nagato, Susan R. McCouch, Masahiro Yano, Guo‐Liang Wang, Kshirod K. Jena, Lizhong Xiong, Blake C. Meyers, Pankaj Jaiswal, Yukiko Yamazaki
Software Mentions: 1
Published: almost 13 years ago
10.1186/1939-8433-6-14
WikiPathways for plants: a community pathway curation portal and a case study in rice and arabidopsis seed development networksCited by: 15
Author(s): Mamatha Hanumappa, Justin Preece, Justin Elser, Denise Nemeth, Gina Bono, Kenny Wu, Pankaj Jaiswal
Software Mentions: 1
Published: over 11 years ago
10.3390/ma14123200
Reusing Jet Grouting Waste as Filler for Road Asphalt Mixtures of Base LayersCited by: 13
Author(s): Francesca Russo, Rosa Veropalumbo, Salvatore Antonio Biancardo, Cristina Oreto, Fabio Scherillo, Nunzio Viscione
Software Mentions: 1
Published: over 3 years ago
10.1017/mdh.2017.77
‘From Defensive Paranoia to …Openness to Outside Scrutiny’: Prison Medical Officers in England and Wales, 1979–86Cited by: 3
Author(s): Nicholas Duvall
Software Mentions: 1
Published: about 7 years ago
10.3390/ma14164668
Effects of Isothermal Temperature and Soaking Time on Water Quenched Microstructure of Nickel-Based Superalloy GH3536 Semi-Solid BilletsCited by: 1
Author(s): Guanfei Xiao, Jufu Jiang, Ying Wang, Yingze Liu, Ying Zhang, Yinfeng Tian
Software Mentions: 1
Published: over 3 years ago
10.5811/westjem.2016.12.32850
A Survey of Emergency Medicine Residents’ Use of Educational PodcastsCited by: 67
Author(s): Jeff Riddell, Anand Swaminathan, Monica Lee, Abdiwahab Mohamed, Rob Rogers, Salim R. Rezaie
Software Mentions: 1
Published: almost 8 years ago
10.1186/s13046-019-1084-4
Poly-specific neoantigen-targeted cancer vaccines delay patient derived tumor growthCited by: 31
Author(s): Luigi Aurisicchio, Erika Salvatori, Lucia Lione, Silvio Bandini, Matteo Pallocca, Roberta Maggio, Maurizio Fanciulli, Francesca De Nicola, Frauke Goeman, Gennaro Ciliberto, Antonella Conforti, Laura Luberto, Fabio Palombo
Software Mentions: 1
Published: almost 6 years ago
10.1186/s12284-018-0254-x
Genome-wide association study and candidate gene analysis of rice cadmium accumulation in grain in a diverse rice collectionCited by: 67
Author(s): Junliang Zhao, Yang Wu, Shaohong Zhang, Ting Yang, Qin Liu, Jingfang Dong, Hua Fu, Xingxue Mao, Bin Liu
Software Mentions: 1
Published: about 6 years ago
10.1186/s13071-015-0998-8
Cost analysis of options for management of African Animal Trypanosomiasis using interventions targeted at cattle in Tororo District; south-eastern UgandaCited by: 36
Author(s): Dennis Muhanguzi, Walter Okello, John David Kabasa, Charles Waiswa, Susan C. Welburn, Alexandra Shaw
Software Mentions: 1
Published: over 9 years ago