Ecosyste.ms: Papers

An open API service providing mapping between scientific papers and software projects that are mentioned in them.
All mentions data is based on the CZI Software Mentions dataset.

Papers: 10.1186/s12859-021-04211-7

https://doi.org/10.1186/s12859-021-04211-7

RNAdetector: a free user-friendly stand-alone and cloud-based system for RNA-Seq data analysis

Cited by: 6
Author(s): Alessandro La Ferlita, Salvatore Alaimo, Sebastiano Di Bella, Emanuele Martorana, Georgios I. Laliotis, Francesco Bertoni, Luciano Cascione, Philip N. Tsichlis, Alfredo Ferro, Roberta Bosotti, Alfredo Pulvirenti
Published: over 3 years ago

Software Mentions 10

bioconductor: ArrayExpressHTS
ArrayExpress High Throughput Sequencing Processing Pipeline
Papers that mentioned: 7
bioconductor: DESeq2
Differential gene expression analysis based on the negative binomial distribution
Papers that mentioned: 9,583
bioconductor: easyRNASeq
Count summarization and normalization for RNA-Seq data
Papers that mentioned: 17
bioconductor: edgeR
Empirical Analysis of Digital Gene Expression Data in R
Papers that mentioned: 6,568
bioconductor: limma
Linear Models for Microarray Data
Papers that mentioned: 7,776
cran: RAP
Reversal Association Pattern
Papers that mentioned: 118
cran: SAM
Sparse Additive Modelling
Papers that mentioned: 4,566
cran: STAR
Spike Train Analysis with R
Papers that mentioned: 5,759
pypi: 0
0
Papers that mentioned: 1,265
pypi: CIRIquant
circular RNA quantification pipeline
Papers that mentioned: 6