Ecosyste.ms: Papers

An open API service providing mapping between scientific papers and software projects that are mentioned in them.
All mentions data is based on the CZI Software Mentions dataset.

Projects: bioconductor: ArrayExpressHTS

https://packages.ecosyste.ms/registries/bioconductor.org/packages/ArrayExpressHTS

ArrayExpress High Throughput Sequencing Processing Pipeline
1 version
Latest release: about 1 year ago
17,751 downloads total

Papers Mentioning ArrayExpressHTS 7

10.1186/s12859-021-04211-7

RNAdetector: a free user-friendly stand-alone and cloud-based system for RNA-Seq data analysis
Cited by: 6
Author(s): Alessandro La Ferlita, Salvatore Alaimo, Sebastiano Di Bella, Emanuele Martorana, Georgios I. Laliotis, Francesco Bertoni, Luciano Cascione, Philip N. Tsichlis, Alfredo Ferro, Roberta Bosotti, Alfredo Pulvirenti
Software Mentions: 10
Published: over 3 years ago

10.1371/journal.pone.0066902

Connectivity Mapping for Candidate Therapeutics Identification Using Next Generation Sequencing RNA-Seq Data
Cited by: 16
Author(s): Darragh G. McArt, Philip D. Dunne, Jaine K. Blayney, Manuel Salto-Tellez, Sandra Van Schaeybroeck, Peter Hamilton, Shudong Zhang
Software Mentions: 9
Published: over 11 years ago

10.1371/journal.pone.0025279

GENE-Counter: A Computational Pipeline for the Analysis of RNA-Seq Data for Gene Expression Differences
Cited by: 62
Author(s): Jason S. Cumbie, Jeffrey A. Kimbrel, Yanming Di, Daniel W. Schafer, Larry J. Wilhelm, Samuel E. Fox, Christopher Sullivan, Aron D. Curzon, James C. Carrington, Todd C. Mockler, Jeff H. Chang
Software Mentions: 6
Published: about 13 years ago

10.1371/journal.pone.0069401

TCW: Transcriptome Computational Workbench
Cited by: 16
Author(s): Carol Soderlund, William M. Nelson, Mark R. Willer, David R. Gang
Software Mentions: 4
Published: over 11 years ago

10.1371/journal.pone.0115740

Allele Workbench: Transcriptome Pipeline and Interactive Graphics for Allele-Specific Expression
Cited by: 10
Author(s): Carol Soderlund, William M. Nelson, Stephen A. Goff
Software Mentions: 4
Published: about 10 years ago

10.1186/1471-2164-15-176

eRNA: a graphic user interface-based tool optimized for large data analysis from high-throughput RNA sequencing
Cited by: 16
Author(s): Tiezheng Yuan, Xiaoyi Huang, Rachel L. Dittmar, Meijun Du, Manish Kohli, Lisa A. Boardman, Stephen N. Thibodeau, Liang Wang
Software Mentions: 2
Published: almost 11 years ago

10.1186/gb-2011-12-2-r13

Haplotype and isoform specific expression estimation using multi-mapping RNA-seq reads
Cited by: 226
Author(s): Ernest Turro, Shu-Yi Su, Ângela Gonçalves, Lachlan Coin, Sylvia Richardson, Arie Y. Lewin
Software Mentions: 2
Published: almost 14 years ago