Ecosyste.ms: Papers

An open API service providing mapping between scientific papers and software projects that are mentioned in them.
All mentions data is based on the CZI Software Mentions dataset.

Papers: 10.1371/journal.pone.0025279

https://doi.org/10.1371/journal.pone.0025279

GENE-Counter: A Computational Pipeline for the Analysis of RNA-Seq Data for Gene Expression Differences

Cited by: 62
Author(s): Jason S. Cumbie, Jeffrey A. Kimbrel, Yanming Di, Daniel W. Schafer, Larry J. Wilhelm, Samuel E. Fox, Christopher Sullivan, Aron D. Curzon, James C. Carrington, Todd C. Mockler, Jeff H. Chang
Published: about 13 years ago

Software Mentions 6

bioconductor: ArrayExpressHTS
ArrayExpress High Throughput Sequencing Processing Pipeline
Papers that mentioned: 7
bioconductor: edgeR
Empirical Analysis of Digital Gene Expression Data in R
Papers that mentioned: 6,568
bioconductor: qvalue
Q-value estimation for false discovery rate control
Papers that mentioned: 248
cran: NBPSeq
Negative Binomial Models for RNA-Sequencing Data
Papers that mentioned: 32
cran: SAM
Sparse Additive Modelling
Papers that mentioned: 4,566
pypi: TopHat
TopHat Platform
Papers that mentioned: 5,017