Ecosyste.ms: Papers

10.3389/fmicb.2014.00358

Demonstrating microbial co-occurrence pattern analyses within and between ecosystems
Cited by: 239
Author(s): Ryan J. Williams, Adina Howe, Kirsten Hofmockel
Software Mentions: 6
Published: over 10 years ago

10.1093/gigascience/giz083

iMicrobe: Tools and data-driven discovery platform for the microbiome sciences
Cited by: 24
Author(s): Ken Youens‐Clark, Matt Bomhoff, Alise J. Ponsero, Elisha M. Wood‐Charlson, Joshua Lynch, Illyoung Choi, John H. Hartman, Bonnie Hurwitz
Software Mentions: 5
Published: over 5 years ago

10.1371/journal.pone.0131944

Perilipin-2 Modulates Lipid Absorption and Microbiome Responses in the Mouse Intestine
Cited by: 42
Author(s): Daniel N. Frank, Elise S. Bales, Jenifer Monks, Matthew J. Jackman, Paul S. MacLean, Diana Ir, Charles E. Robertson, David J. Orlicky, James L. McManaman
Software Mentions: 2
Published: over 9 years ago

10.3389/fmicb.2016.00259

Anthropogenic N Deposition Slows Decay by Favoring Bacterial Metabolism: Insights from Metagenomic Analyses
Cited by: 49
Author(s): Zachary B. Freedman, Rima A. Upchurch, Donald R. Zak, Lauren C. Cline
Software Mentions: 2
Published: over 8 years ago

10.1371/journal.pone.0097435

Human and Environmental Impacts on River Sediment Microbial Communities
Cited by: 105
Author(s): Sean M. Gibbons, Edwin P. Jones, Angelita Bearquiver, Frederick Blackwolf, Wayne Roundstone, Nicole M. Scott, Jeff Hooker, Robert Madsen, Maureen L. Coleman, Jack A. Gilbert
Software Mentions: 2
Published: over 10 years ago

10.1186/s12870-017-0992-8

Comparative mitogenomics indicates respiratory competence in parasitic Viscum despite loss of complex I and extreme sequence divergence, and reveals horizontal gene transfer and remarkable variation in genome size
Cited by: 49
Author(s): Elizabeth Skippington, Todd J. Barkman, Danny W. Rice, Jeffrey D. Palmer
Software Mentions: 1
Published: over 7 years ago

10.1007/s10126-017-9741-0

Nitrogen Metabolism Genes from Temperate Marine Sediments
Cited by: 30
Author(s): Carolina Reyes, Dominik Schneider, Marko Lipka, Andrea Thürmer, Michael E. Böttcher, Michael W. Friedrich
Software Mentions: 1
Published: over 7 years ago

10.1371/journal.pone.0099725

Impact of Gene Molecular Evolution on Phylogenetic Reconstruction: A Case Study in the Rosids (Superorder Rosanae, Angiosperms)
Cited by: 19
Author(s): Khidir W. Hilu, Chelsea M. Black, Dipan Oza
Software Mentions: 1
Published: over 10 years ago

10.1186/1472-6750-11-54

Isolation and analysis of high quality nuclear DNA with reduced organellar DNA for plant genome sequencing and resequencing
Cited by: 101
Author(s): Kerry Ann Lutz, Wenqin Wang, Anna Zdepski, Todd P. Michael
Software Mentions: 1
Published: over 13 years ago

10.1038/s41598-020-63233-y

Mitochondrial plastid DNA can cause DNA barcoding paradox in plants
Cited by: 26
Author(s): Hyun Seung Park, Murukarthick Jayakodi, Sae Hyun Lee, Jae Hyeon Jeon, Hyun Oh Lee, Jee Young Park, Byeong Cheol Moon, Chang Kug Kim, Rod A. Wing, Steven G. Newmaster, Ji Yeon Kim, Tae Jin Yang
Software Mentions: 1
Published: over 4 years ago

10.1186/1471-2148-10-219

The worldwide holoparasitic Apodanthaceae confidently placed in the Cucurbitales by nuclear and mitochondrial gene trees
Cited by: 37
Author(s): Natalia Filipowicz, Susanne S. Renner
Software Mentions: 1
Published: almost 15 years ago

10.1186/1471-2148-7-248

Mitochondrial DNA suggests at least 11 origins of parasitism in angiosperms and reveals genomic chimerism in parasitic plants
Cited by: 208
Author(s): Todd J. Barkman, Joel R. McNeal, Seok Hong Lim, Gwen Coat, Henrietta Brown Croom, Nelson D. Young, Claude W. dePamphilis
Software Mentions: 1
Published: almost 18 years ago

10.1186/1471-2148-7-217

Mitochondrial matR sequences help to resolve deep phylogenetic relationships in rosids
Cited by: 67
Author(s): Xin Yu Zhu, Mark W. Chase, Yin Long Qiu, Hong Zhi Kong, David L. Dilcher, Jian Hua Li, Zhi Duan Chen
Software Mentions: 1
Published: almost 17 years ago

10.1186/1471-2148-4-40

Cited by: 121
Author(s): Daniel L. Nickrent, Albert Blarer, Yin Long Qiu, Romina Vidal‐Russell, Frank E. Anderson
Software Mentions: 1
Published: almost 21 years ago