Ecosyste.ms: Papers
An open API service providing mapping between scientific papers and software projects that are mentioned in them.
All mentions data is based on the CZI Software Mentions dataset.
Projects: pypi: molecular
https://packages.ecosyste.ms/registries/pypi.org/packages/molecular
A toolkit for molecular dynamics simulations
309 versions
Latest release: almost 2 years ago
330 downloads last month
Papers Mentioning molecular 14
10.1371/journal.pone.0116177
Evolution of p53 Transactivation Specificity through the Lens of a Yeast-Based Functional AssayCited by: 12
Author(s): Mattia Lion, Ivan Raimondi, Stefano Donati, Olivier Jousson, Yari Ciribilli, Alberto Inga
Software Mentions: 6
Published: almost 10 years ago
10.3390/biomedicines9030249
In Silico Drug Repurposing by Structural Alteration after Induced Fit: Discovery of a Candidate Agent for Recovery of Nucleotide Excision Repair in Xeroderma Pigmentosum Group D Mutant (R683W)Cited by: 4
Author(s): Yutaka Takaoka, Mika Ohta, Seiichiro Tateishi, Aki Sugano, Eiji Nakano, Kenji Miura, Takashi Suzuki, Chikako Nishigori
Software Mentions: 3
Published: over 3 years ago
10.3390/ijms21103621
Computational Simulations to Guide Enzyme-Mediated Prodrug ActivationCited by: 11
Author(s): Milica Marković, Shimon Ben‐Shabat, Arik Dahan
Software Mentions: 3
Published: over 4 years ago
10.3389/fmicb.2016.01071
A Novel Electrophototrophic Bacterium Rhodopseudomonas palustris Strain RP2, Exhibits Hydrocarbonoclastic Potential in Anaerobic EnvironmentsCited by: 37
Author(s): Krishnaveni Venkidusamy, Mallavarapu Megharaj
Software Mentions: 2
Published: over 8 years ago
10.1186/s12978-019-0814-6
Associations between dietary micronutrient intake and molecular-Bacterial VaginosisCited by: 24
Author(s): Susan Tuddenham, Khalil G. Ghanem, Laura E. Caulfield, Alisha J. Rovner, Courtney K. Robinson, Rupak Shivakoti, Ryan S. Miller, Anne E. Burke, Catherine C. Murphy, Jacques Ravel, Rebecca M. Brotman
Software Mentions: 2
Published: about 5 years ago
10.3389/fpls.2016.00846
Effects of Intercropping with Potato Onion on the Growth of Tomato and Rhizosphere Alkaline Phosphatase Genes DiversityCited by: 28
Author(s): Xiaohu Wu, Fengzhi Wu, Xingang Zhou, Xuepeng Fu, Yue Tao, Weihui Xu, Kaiwen Pan, Shouwei Liu
Software Mentions: 1
Published: over 8 years ago
10.1186/s13099-016-0125-1
Zonula occludens toxins and their prophages in Campylobacter speciesCited by: 24
Author(s): Fang Liu, Hoyul Lee, Ruiting Lan, Li Zhang
Software Mentions: 1
Published: about 8 years ago
10.1371/journal.ppat.1003132
Atomic Model of Rabbit Hemorrhagic Disease Virus by Cryo-Electron Microscopy and CrystallographyCited by: 95
Author(s): Xuecong Wang, Fengting Xu, Jiasen Liu, Bin Gao, Yanxin Liu, Yujia Zhai, Jun Ma, Kai Zhang, Timothy S. Baker, Klaus Schulten, Zheng Dong, Hua Pang, Fei Sun
Software Mentions: 1
Published: almost 12 years ago
10.1007/s00894-019-4133-1
Insights into the mechanism(s) of digestion of crystalline cellulose by plant class C GH9 endoglucanasesCited by: 5
Author(s): Siddhartha Kundu
Software Mentions: 1
Published: over 5 years ago
10.3389/fmicb.2016.01965
Identification of Electrode Respiring, Hydrocarbonoclastic Bacterial Strain Stenotrophomonas maltophilia MK2 Highlights the Untapped Potential for Environmental BioremediationCited by: 23
Author(s): Krishnaveni Venkidusamy, Mallavarapu Megharaj
Software Mentions: 1
Published: almost 8 years ago
10.14202/vetworld.2020.2625-2634
The genetic profiles and maternal origin of local sheep breeds on Java Island (Indonesia) based on complete mitochondrial DNA D-loop sequencesCited by: 7
Author(s): Alek Ibrahim, I Gede Suparta Budisatria, Rini Widayanti, Wayan Tunas Artama
Software Mentions: 1
Published: almost 5 years ago
10.1371/journal.pone.0045981
Biochemical and Molecular Dynamic Simulation Analysis of a Weak Coiled Coil Association between Kinesin-II StalksCited by: 10
Author(s): Harinath Doodhi, Swadhin Chandra Jana, Pavithra Devan, Shyamalava Mazumdar, Krishanu Ray
Software Mentions: 1
Published: about 12 years ago
10.3389/fcimb.2020.00106
Asymptomatic Bacterial Vaginosis Is Associated With Depletion of Mature Superficial Cells Shed From the Vaginal EpitheliumCited by: 16
Author(s): Deirdre Elizabeth O’Hanlon, Pawel Gajer, Rebecca M. Brotman, Jacques Ravel
Software Mentions: 1
Published: over 4 years ago
10.3390/antibiotics10070873
Biosynthetic Potential of Streptomyces Rationalizes Genome-Based BioprospectingCited by: 4
Author(s): Balasubramanian Cibichakravarthy, Polapass Arul Jose
Software Mentions: 1
Published: over 3 years ago