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Applications

Experiments

Papers

cran: RCurl
General Network (HTTP/FTP/...) Client Interface for R
Papers that mentioned: 36
Very Likely Science (85)
bioconductor: SingleCellExperiment
S4 Classes for Single Cell Data
Papers that mentioned: 36
Very Likely Science (75)
pypi: dPCA
Implements Demixed Principal Components Analysis
Papers that mentioned: 36
Very Likely Science (100)
pypi: gff3
Manipulate genomic features and validate the syntax and reference sequence of your GFF3 files.
Papers that mentioned: 36
Very Likely Science (85)
pypi: nltk
Natural Language Toolkit
Papers that mentioned: 36
Very Likely Science (70)
pypi: NEB
Namespace package for NEB projects.
Papers that mentioned: 36
Very Likely Science (80)
cran: fastcluster
Fast Hierarchical Clustering Routines for R and 'Python'
Papers that mentioned: 36
Very Likely Science (75)
cran: sandwich
Robust Covariance Matrix Estimators
Papers that mentioned: 35
Very Likely Science (85)
cran: openxlsx
Read, Write and Edit xlsx Files
Papers that mentioned: 35
Very Likely Science (100)
pypi: sandwich
sudo make_me_a_sandwich.
Papers that mentioned: 35
Very Likely Science (65)
cran: BlandAltmanLeh
Plots (Slightly Extended) Bland-Altman Plots
Papers that mentioned: 35
Very Likely Science (75)
pypi: utils
A grab-bag of utility functions and objects
Papers that mentioned: 35
Very Likely Science (60)
cran: diveMove
Dive Analysis and Calibration
Papers that mentioned: 35
Very Likely Science (87)
cran: ggsci
Scientific Journal and Sci-Fi Themed Color Palettes for 'ggplot2'
Papers that mentioned: 35
Very Likely Science (93)
cran: PopGenReport
A Simple Framework to Analyse Population and Landscape Genetic Data
Papers that mentioned: 35
Very Likely Science (100)
bioconductor: DEP
Differential Enrichment analysis of Proteomics data
Papers that mentioned: 35
Very Likely Science (100)
cran: locfit
Local Regression, Likelihood and Density Estimation
Papers that mentioned: 35
Very Likely Science (85)
cran: dunn.test
Dunn's Test of Multiple Comparisons Using Rank Sums
Papers that mentioned: 35
Very Likely Science (83)
cran: BiocManager
Access the Bioconductor Project Package Repository
Papers that mentioned: 35
Very Likely Science (96)
bioconductor: HTSFilter
Filter replicated high-throughput transcriptome sequencing data
Papers that mentioned: 35
Very Likely Science (75)
pypi: HARP
Papers that mentioned: 35
Very Likely Science (65)
pypi: run
Python Process Run Control
Papers that mentioned: 35
Very Likely Science (65)
cran: seewave
Sound Analysis and Synthesis
Papers that mentioned: 35
Very Likely Science (85)
cran: SOAR
Memory management in R by delayed assignments
Papers that mentioned: 35
Very Likely Science (75)
cran: PRROC
Precision-Recall and ROC Curves for Weighted and Unweighted Data
Papers that mentioned: 35
Very Likely Science (83)
pypi: MultiPoint
WLC Structure Factor
Papers that mentioned: 35
Very Likely Science (100)
cran: spThin
Functions for Spatial Thinning of Species Occurrence Records for Use in Ecological Models
Papers that mentioned: 35
Very Likely Science (100)
cran: COR
The COR for Optimal Subset Selection in Distributed Estimation
Papers that mentioned: 35
Very Likely Science (75)
cran: Rserve
Binary R server
Papers that mentioned: 35
Very Likely Science (75)
pypi: READemption
A RNA-Seq Analysis Pipeline
Papers that mentioned: 35
Very Likely Science (90)
cran: MTS
All-Purpose Toolkit for Analyzing Multivariate Time Series (MTS) and Estimating Multivariate Volatility Models
Papers that mentioned: 35
Very Likely Science (93)
pypi: propy
Library of class property creation functions for type conversion and validation.
Papers that mentioned: 35
Likely Science (40)
pypi: Medea
JSON Object Mapper / Encoder
Papers that mentioned: 34
Very Likely Science (65)
cran: KernSmooth
Functions for Kernel Smoothing Supporting Wand & Jones (1995)
Papers that mentioned: 34
Very Likely Science (83)
cran: ca
Simple, Multiple and Joint Correspondence Analysis
Papers that mentioned: 34
Very Likely Science (85)
bioconductor: TargetSearch
A package for the analysis of GC-MS metabolite profiling data
Papers that mentioned: 34
Very Likely Science (100)
cran: strucchange
Testing, Monitoring, and Dating Structural Changes
Papers that mentioned: 34
Very Likely Science (85)
pypi: hyperopt
Distributed Asynchronous Hyperparameter Optimization
Papers that mentioned: 34
Very Likely Science (100)
pypi: NMODL
NEURON Modeling Language Source-to-Source Compiler Framework
Papers that mentioned: 34
Very Likely Science (75)
cran: fields
Tools for Spatial Data
Papers that mentioned: 34
Very Likely Science (75)
pypi: vg
Linear algebra for humans: a very good vector-geometry and linear-algebra toolbelt
Papers that mentioned: 34
Very Likely Science (80)
cran: class
Functions for Classification
Papers that mentioned: 34
Very Likely Science (83)
bioconductor: scmap
A tool for unsupervised projection of single cell RNA-seq data
Papers that mentioned: 34
Very Likely Science (100)
pypi: scmap
Assigns rgb colors to points on sphere.
Papers that mentioned: 34
Very Likely Science (65)
cran: moments
Moments, Cumulants, Skewness, Kurtosis and Related Tests
Papers that mentioned: 34
Very Likely Science (75)
cran: GFA
Group Factor Analysis
Papers that mentioned: 34
Very Likely Science (85)
cran: rpart.plot
Plot 'rpart' Models: An Enhanced Version of 'plot.rpart'
Papers that mentioned: 34
Very Likely Science (75)
pypi: class
A simple class!
Papers that mentioned: 34
Very Likely Science (65)
pypi: fields
Container class boilerplate killer.
Papers that mentioned: 34
Likely Science (40)
cran: DOS
Design of Observational Studies
Papers that mentioned: 34
Very Likely Science (83)
pypi: zt
util
Papers that mentioned: 34
Very Likely Science (65)
pypi: predictor
Serve up scikit-learn models for prediction
Papers that mentioned: 34
Very Likely Science (65)
pypi: qcat
Qcat is Python command-line tool for demultiplexing Oxford Nanopore reads from FASTQ files
Papers that mentioned: 34
Very Likely Science (65)
pypi: ca
Papers that mentioned: 34
Very Likely Science (65)
pypi: pyFAI
Python implementation of fast azimuthal integration
Papers that mentioned: 34
Very Likely Science (100)
cran: survMisc
Miscellaneous Functions for Survival Data
Papers that mentioned: 34
Very Likely Science (75)
pypi: analyst
Data analysis toolkit
Papers that mentioned: 34
Very Likely Science (90)
cran: sctransform
Variance Stabilizing Transformations for Single Cell UMI Data
Papers that mentioned: 34
Very Likely Science (100)
cran: fda
Functional Data Analysis
Papers that mentioned: 34
Very Likely Science (85)
pypi: liftover
Package for converting between genome build coordinates
Papers that mentioned: 34
Very Likely Science (80)
cran: stringi
Fast and Portable Character String Processing Facilities
Papers that mentioned: 34
Very Likely Science (75)
pypi: Record
Special Record objects used in Zope.
Papers that mentioned: 33
Very Likely Science (80)
cran: DAAG
Data Analysis and Graphics Data and Functions
Papers that mentioned: 33
Very Likely Science (85)
pypi: LFPy
A module for modeling extracellular potentials of multicompartment neuron models built on NEURON
Papers that mentioned: 33
Very Likely Science (90)
pypi: miner
UNKNOWN
Papers that mentioned: 33
Very Likely Science (65)
bioconductor: GeneAnswers
Papers that mentioned: 33
Unlikely Science (0)
pypi: config
A hierarchical, easy-to-use, powerful configuration module for Python
Papers that mentioned: 33
Very Likely Science (65)
pypi: dlib
A toolkit for making real world machine learning and data analysis applications
Papers that mentioned: 33
Very Likely Science (100)
cran: Momocs
Morphometrics using R
Papers that mentioned: 33
Very Likely Science (95)
pypi: HiCExplorer
Set of programs to process, analyze and visualize Hi-C data
Papers that mentioned: 33
Very Likely Science (80)
pypi: eclipse
A simplified and extended version of OpenAI's Contrastive Language-Image Pretraining
Papers that mentioned: 33
Very Likely Science (65)
pypi: panther
Fast & Friendly, Web Framework For Building Async APIs
Papers that mentioned: 33
Very Likely Science (65)
cran: Nonpareil
Metagenome Coverage Estimation and Projections for 'Nonpareil'
Papers that mentioned: 33
Very Likely Science (75)
cran: diversitree
Comparative 'Phylogenetic' Analyses of Diversification
Papers that mentioned: 33
Very Likely Science (85)
pypi: TPOT
Tree-based Pipeline Optimization Tool
Papers that mentioned: 33
Very Likely Science (100)
cran: poweRlaw
Analysis of Heavy Tailed Distributions
Papers that mentioned: 33
Very Likely Science (100)
cran: bibliometrix
Comprehensive Science Mapping Analysis
Papers that mentioned: 33
Very Likely Science (85)
cran: cgdsr
R-Based API for Accessing the MSKCC Cancer Genomics Data Server (CGDS)
Papers that mentioned: 33
Very Likely Science (85)
pypi: cell
Kombu actor framework
Papers that mentioned: 33
Very Likely Science (80)
pypi: forcats
Tools for working with pandas categoricals
Papers that mentioned: 33
Very Likely Science (65)
pypi: data
Work with unicode/non-unicode data from files or strings uniformly.
Papers that mentioned: 33
Very Likely Science (65)
cran: forcats
Tools for Working with Categorical Variables (Factors)
Papers that mentioned: 33
Very Likely Science (100)
bioconductor: TFBSTools
Software Package for Transcription Factor Binding Site (TFBS) Analysis
Papers that mentioned: 33
Very Likely Science (100)
cran: config
Manage Environment Specific Configuration Values
Papers that mentioned: 33
Very Likely Science (77)
bioconductor: Rgraphviz
Provides plotting capabilities for R graph objects
Papers that mentioned: 33
Very Likely Science (100)
bioconductor: BiSeq
Processing and analyzing bisulfite sequencing data
Papers that mentioned: 33
Very Likely Science (100)
cran: dlib
Allow Access to the 'Dlib' C++ Library
Papers that mentioned: 33
Very Likely Science (75)
pypi: PPA
Python Publishing Accessories (PPA) is a library of python modules useful to build web publication systems
Papers that mentioned: 33
Very Likely Science (65)
pypi: R4
R4 is a python package for encrypt your important data
Papers that mentioned: 33
Very Likely Science (65)
bioconductor: flowClust
Clustering for Flow Cytometry
Papers that mentioned: 33
Very Likely Science (90)
bioconductor: NormqPCR
Functions for normalisation of RT-qPCR data
Papers that mentioned: 33
Very Likely Science (90)
pypi: diff
"You diff objects, you find out why they ain't the same."
Papers that mentioned: 33
Very Likely Science (65)
bioconductor: MethylSeekR
Segmentation of Bis-seq data
Papers that mentioned: 33
Very Likely Science (90)
pypi: modeller
create efficent models starting from json schema
Papers that mentioned: 33
Very Likely Science (65)
pypi: CellNet
Papers that mentioned: 33
Very Likely Science (65)
pypi: diversitree
:palm_tree: Choose the most diverse possible set of strains from a phylogenetic tree
Papers that mentioned: 33
Very Likely Science (80)
pypi: jellyfish
Approximate and phonetic matching of strings.
Papers that mentioned: 33
Very Likely Science (65)
cran: klaR
Classification and Visualization
Papers that mentioned: 33
Very Likely Science (85)
cran: secr
Spatially Explicit Capture-Recapture
Papers that mentioned: 33
Very Likely Science (100)
cran: splancs
Spatial and Space-Time Point Pattern Analysis
Papers that mentioned: 33
Very Likely Science (85)