Ecosyste.ms: Papers
An open API service providing mapping between scientific papers and software projects that are mentioned in them.
All mentions data is based on the CZI Software Mentions dataset.
cran: spThin
Functions for Spatial Thinning of Species Occurrence Records for Use in Ecological ModelsPapers that mentioned: 35
cran: PRROC
Precision-Recall and ROC Curves for Weighted and Unweighted DataPapers that mentioned: 35
cran: PopGenReport
A Simple Framework to Analyse Population and Landscape Genetic DataPapers that mentioned: 35
bioconductor: HTSFilter
Filter replicated high-throughput transcriptome sequencing dataPapers that mentioned: 35
cran: ggsci
Scientific Journal and Sci-Fi Themed Color Palettes for 'ggplot2'Papers that mentioned: 35
cran: MTS
All-Purpose Toolkit for Analyzing Multivariate Time Series (MTS) and Estimating Multivariate Volatility ModelsPapers that mentioned: 35
pypi: propy
Library of class property creation functions for type conversion and validation.Papers that mentioned: 35
cran: sctransform
Variance Stabilizing Transformations for Single Cell UMI DataPapers that mentioned: 34
pypi: vg
Linear algebra for humans: a very good vector-geometry and linear-algebra toolbeltPapers that mentioned: 34
cran: KernSmooth
Functions for Kernel Smoothing Supporting Wand & Jones (1995)Papers that mentioned: 34
bioconductor: TargetSearch
A package for the analysis of GC-MS metabolite profiling dataPapers that mentioned: 34
bioconductor: scmap
A tool for unsupervised projection of single cell RNA-seq dataPapers that mentioned: 34
pypi: qcat
Qcat is Python command-line tool for demultiplexing Oxford Nanopore reads from FASTQ filesPapers that mentioned: 34
pypi: config
A hierarchical, easy-to-use, powerful configuration module for PythonPapers that mentioned: 33
cran: cgdsr
R-Based API for Accessing the MSKCC Cancer Genomics Data Server (CGDS)Papers that mentioned: 33
pypi: eclipse
A simplified and extended version of OpenAI's Contrastive Language-Image PretrainingPapers that mentioned: 33
pypi: HiCExplorer
Set of programs to process, analyze and visualize Hi-C dataPapers that mentioned: 33
bioconductor: TFBSTools
Software Package for Transcription Factor Binding Site (TFBS) AnalysisPapers that mentioned: 33
pypi: LFPy
A module for modeling extracellular potentials of multicompartment neuron models built on NEURONPapers that mentioned: 33
cran: Nonpareil
Metagenome Coverage Estimation and Projections for 'Nonpareil'Papers that mentioned: 33
bioconductor: GeneAnswers
Papers that mentioned: 33bioconductor: Rgraphviz
Provides plotting capabilities for R graph objectsPapers that mentioned: 33