Ecosyste.ms: Papers
An open API service providing mapping between scientific papers and software projects that are mentioned in them.
All mentions data is based on the CZI Software Mentions dataset.
Projects: bioconductor: NormqPCR
https://packages.ecosyste.ms/registries/bioconductor.org/packages/NormqPCR
Functions for normalisation of RT-qPCR data
1 version
Latest release: about 1 year ago
54,707 downloads total
Papers Mentioning NormqPCR 33
10.1186/s12974-021-02235-7
Sex differences and similarities in the neuroimmune response to central administration of poly I:CCited by: 14
Author(s): Caitlin K. Posillico, Rosa E. Garcia-Hernandez, Natalie C. Tronson
Software Mentions: 12
Published: about 3 years ago
10.1007/s10120-021-01161-0
A novel combination of serum microRNAs for the detection of early gastric cancerCited by: 15
Author(s): Seiichiro Abe, Juntaro Matsuzaki, Kazuki Sudo, Ichiro Oda, Hitoshi Katai, Ken Kato, Satoko Takizawa, Hiromi Sanada, Fumitaka Takeshita, Shumpei Niida, Yutaka Saito, Takahiro Ochiya
Software Mentions: 7
Published: over 3 years ago
10.1093/jxb/eraa124
Transcriptomics in Erigeron canadensis reveals rapid photosynthetic and hormonal responses to auxin herbicide applicationCited by: 19
Author(s): Cara L. McCauley, Scott A. M. McAdam, Ketaki P. Bhide, Jyothi Thimmapuram, Jo Ann Banks, Bryan G. Young
Software Mentions: 5
Published: over 4 years ago
10.3390/biom11030449
RNA-seq Characterization of Melanoma Phenotype Switch in 3D Collagen after p38 MAPK Inhibitor TreatmentCited by: 1
Author(s): Vladimı́r Čermák, Aneta Škarková, Ladislav Merta, Veronika Kolomazníková, Veronika Palušová, Stjepan Uldrijan, Daniel Rösel, Jan Brábek
Software Mentions: 4
Published: over 3 years ago
10.1186/1471-2164-13-296
ReadqPCR and NormqPCR: R packages for the reading, quality checking and normalisation of RT-qPCR quantification cycle (Cq) dataCited by: 167
Author(s): James R. Perkins, J. D. K. Dawes, Stephen B. McMahon, David L.H. Bennett, Christine A. Orengo, Matthias Kohl
Software Mentions: 4
Published: almost 13 years ago
10.1038/s41598-017-10861-6
Small ocean temperature increases elicit stage-dependent changes in DNA methylation and gene expression in a fish, the European sea bassCited by: 73
Author(s): Dafni Anastasiadi, Noèlia Díaz, Francesc Piferrer
Software Mentions: 4
Published: about 7 years ago
10.1371/journal.pone.0156259
Identification and Validation of Reference Genes for RT-qPCR Studies of Hypoxia in Squamous Cervical Cancer PatientsCited by: 26
Author(s): Christina S. Fjeldbo, Eva‐Katrine Aarnes, Eirik Malinen, Gunnar B. Kristensen, Heidi Lyng
Software Mentions: 4
Published: over 8 years ago
10.1186/s12866-016-0697-4
Ant mediated redistribution of a xyloglucanase enzyme in fungus gardens of Acromyrmex echinatiorCited by: 13
Author(s): Pepijn W. Kooij, Johannes Wilhelmus Maria Pullens, Jacobus J. Boomsma, Morten Schiøtt
Software Mentions: 4
Published: over 8 years ago
10.1371/journal.pone.0210273
Identification of whole blood mRNA and microRNA biomarkers of tissue damage and immune function resulting from amphetamine exposure or heat stroke in adult male ratsCited by: 6
Author(s): Luísa Camacho, Camila S. Silva, Joseph P. Hanig, Robert P. Schleimer, Nysia I. George, John F. Bowyer
Software Mentions: 3
Published: over 5 years ago
10.1371/journal.pone.0167367
Reversing Age Related Changes of the Laryngeal Muscles by Chronic Electrostimulation of the Recurrent Laryngeal NerveCited by: 21
Author(s): Michael Karbiener, Jonathan C. Jarvis, Justin Perkins, Hermann Lanmüller, Martin Schmoll, Hanna S. Rode, Claus Gerstenberger, Markus Gugatschka
Software Mentions: 3
Published: almost 8 years ago
10.1371/journal.pone.0145316
High Throughput qPCR Expression Profiling of Circulating MicroRNAs Reveals Minimal Sex- and Sample Timing-Related Variation in Plasma of Healthy VolunteersCited by: 27
Author(s): Catherine Mooney, Rana Raoof, Hany El‐Naggar, Amaya Sanz‐Rodriguez, Eva M. Jiménez-Mateos, David C. Henshall
Software Mentions: 3
Published: almost 9 years ago
10.3389/fnins.2021.720778
Cerebrospinal Fluid MicroRNA Changes in Cognitively Normal Veterans With a History of Deployment-Associated Mild Traumatic Brain InjuryCited by: 3
Author(s): Theresa A. Lusardi, Ursula S. Sandau, Nikita A. Sakhanenko, Sarah Catherine B Baker, Jack Wiedrick, Jodi Lapidus, Murray A. Raskind, Ge Li, Elaine R. Peskind, David J. Galas, Joseph F. Quinn, Julie A. Saugstad
Software Mentions: 3
Published: about 3 years ago
10.7717/peerj.4047
Evaluation of potential reference genes for real-time qPCR analysis in a biparental beetle,<i>Lethrus apterus</i>(Coleoptera: Geotrupidae)Cited by: 17
Author(s): Nikolett Nagy, Zoltán Németh, Edit Juhász, Szilárd Póliska, R. Rácz, András Kosztolányi, Zoltán Barta
Software Mentions: 3
Published: almost 7 years ago
10.1371/journal.pone.0160173
A Versatile Panel of Reference Gene Assays for the Measurement of Chicken mRNA by Quantitative PCRCited by: 23
Author(s): Karen Staines, Ambalika Batra, William Mwangi, Helena J. Maier, Steven Van Borm, J. R. Young, Mark Fife, Colin Butter
Software Mentions: 3
Published: about 8 years ago
10.1038/srep32299
Circulating intestine-derived exosomal miR-328 in plasma, a possible biomarker for estimating BCRP function in the human intestinesCited by: 23
Author(s): Keisuke Gotanda, Tomoyoshi Hirota, Jumpei Saito, Masato Fukae, YU En, Noritomo Izumi, Mariko Deguchi, Miyuki Kimura, Shunji Matsuki, Shin Irie, Ichiro Ieiri
Software Mentions: 2
Published: about 8 years ago
10.1038/s41598-019-40196-3
Selection of suitable reference genes for gene expression analysis in gills and liver of fish under field pollution conditionsCited by: 15
Author(s): Noemí Rojas‐Hernández, David Véliz, Caren Vega‐Retter
Software Mentions: 2
Published: over 5 years ago
10.1371/journal.pone.0122515
Reference Gene Validation for RT-qPCR, a Note on Different Available Software PackagesCited by: 183
Author(s): Ward De Spiegelaere, Jutta Dern-Wieloch, Roswitha Weigel, Valérie Schumacher, Hubert Schorle, Daniel Nettersheim, Martin Bergmann, Ralph Brehm, Sabine Kliesch, Linos Vandekerckhove, Cornelia Fink
Software Mentions: 2
Published: over 9 years ago
10.3390/ijms21197065
Identification of Acute Myeloid Leukemia Bone Marrow Circulating MicroRNAsCited by: 11
Author(s): Douâa Moussa Agha, Rédouane Rouas, Mehdi Najar, Fatima Bouhtit, Najib Naamane, Hussein Fayyad‐Kazan, Dominique Bron, Nathalie Meuleman, Philippe Lewalle, Makram Merimi
Software Mentions: 2
Published: about 4 years ago
10.18632/oncotarget.10485
Identification of a circulating MicroRNA signature to distinguish recurrence in breast cancer patientsCited by: 61
Author(s): Dezheng Huo, Wendy Clayton, Toshio F. Yoshimatsu, Jianjun Chen, Olufunmilayo I. Olopade
Software Mentions: 2
Published: over 8 years ago
10.1371/journal.pone.0157467
Identification of Reference Genes for Quantitative Gene Expression Studies in a Non-Model Tree Pistachio (Pistacia vera L.)Cited by: 13
Author(s): Maryam Moazzam Jazi, Effat Ghadirzadeh Khorzoghi, Christopher Botanga, Seyed Mahdi Seyedi
Software Mentions: 2
Published: over 8 years ago
10.1371/journal.pone.0219440
Optimal use of statistical methods to validate reference gene stability in longitudinal studiesCited by: 35
Author(s): Venkat Krishnan Sundaram, Nirmal Kumar Sampathkumar, Charbel Massaad, Julien Grenier
Software Mentions: 2
Published: over 5 years ago
10.1371/journal.pone.0193076
Selection and validation of reference genes for quantitative gene expression analyses in black locust (Robinia pseudoacacia L.) using real-time quantitative PCRCited by: 18
Author(s): Jinxing Wang, Yun Li, Yanzhong Wen, Dongsheng Niu, Ling Wang, Yuhan Sun, Yun Li
Software Mentions: 2
Published: over 6 years ago
10.1016/j.eururo.2016.02.058
The Expression of Inflammatory Mediators in Bladder Pain SyndromeCited by: 42
Author(s): Ifeoma Offiah, Athanasios Didangelos, J. D. K. Dawes, Rufus Cartwright, Vik Khullar, Elizabeth J. Bradbury, SS O'Sullivan, Dic Williams, Iain P. Chessell, Kenny Pallas, Gerry Graham, Barry O’Reilly, Stephen B. McMahon
Software Mentions: 2
Published: over 8 years ago
10.1186/s12967-019-2114-x
Circulating microRNAs as minimal residual disease biomarkers in childhood acute lymphoblastic leukemiaCited by: 19
Author(s): Andrea Rzepiel, Nóra Kutszegi, András Gézsi, Judit C. Sági, Bálint Egyed, György Péter, Henriett Butz, G Nyírő, Judit Müller, Gabór Kovàcs, Csaba Szalai, Ágnes F. Semsei, Dániel Erdélyi
Software Mentions: 1
Published: almost 5 years ago
10.1093/bib/bbv056
Normalization of circulating microRNA expression data obtained by quantitative real-time RT-PCRCited by: 203
Author(s): Francesco Marabita, Paola de Candia, A Torri, Jesper Tegnér, Sergio Abrignani, Riccardo L. Rossi
Software Mentions: 1
Published: over 9 years ago
10.1371/journal.pone.0135093
Selection and Evaluation of Tissue Specific Reference Genes in Lucilia sericata during an Immune ChallengeCited by: 21
Author(s): Andre Baumann, Rüdiger Lehmann, Annika Beckert, Andreas Vilcinskas, Zdeněk Franta
Software Mentions: 1
Published: over 9 years ago
10.1371/journal.pone.0093338
Genome-Wide Transcriptional Profiling of Skin and Dorsal Root Ganglia after Ultraviolet-B-Induced InflammationCited by: 46
Author(s): J. D. K. Dawes, Ana Antunes-Martins, James R. Perkins, Kathryn J. Paterson, Marco Sisignano, RM Schmid, Werner Rust, Tobias Hildebrandt, Gerd Geißlinger, Christine Orengo, David L.H. Bennett, Stephen B. McMahon
Software Mentions: 1
Published: over 10 years ago
10.3389/fnbeh.2015.00145
Programming of stress-related behavior and epigenetic neural gene regulation in mice offspring through maternal exposure to predator odorCited by: 76
Author(s): Sophie St-Cyr, Patrick O. McGowan
Software Mentions: 1
Published: over 9 years ago
10.1038/s41598-020-67449-w
Selection and validation of reference genes by RT-qPCR for murine cementoblasts in mechanical loading experiments simulating orthodontic forces in vitroCited by: 8
Author(s): Christian Niederau, Rogerio B. Craveiro, Irma Azraq, Julia Brockhaus, Asisa Bastian, Christian Kirschneck, Michael Wolf
Software Mentions: 1
Published: over 4 years ago
10.1038/s41598-020-73125-w
Evaluation of the expression stability of reference genes in Apis mellifera under pyrethroid treatmentCited by: 10
Author(s): Przemysław Wieczorek, Patryk Frąckowiak, Aleksandra Obrępalska‐Stęplowska
Software Mentions: 1
Published: about 4 years ago
10.1089/ten.tec.2019.0076
Reference Gene Expression in Adipose-Derived Stromal Cells Undergoing Adipogenic DifferentiationCited by: 2
Author(s): Carla Dessels, Michael Sean Pepper
Software Mentions: 1
Published: over 5 years ago
10.3390/ijms21197328
MicroRNA Expression in the Aqueous Humor of Patients with Diabetic Macular EdemaCited by: 12
Author(s): Giuseppina Emanuela Grieco, Guido Sebastiani, Chiara M Eandi, Giovanni Neri, Laura Nigi, Noemi Brusco, Romina D’Aurizio, Matteo Posarelli, Tommaso Bacci, Elena De Benedetto, Mario Fruschelli, Maurizio Orlandini, Federico Galvagni, Francesco Dotta, Gian Marco Tosi
Software Mentions: 1
Published: about 4 years ago
10.1186/s12859-020-03743-8
NormiRazor: tool applying GPU-accelerated computing for determination of internal references in microRNA transcription studiesCited by: 12
Author(s): Szymon Grabia, Urszula Smyczyńska, Konrad Pagacz, Wojciech Fendler
Software Mentions: 1
Published: about 4 years ago