bioconductor: NormqPCR | Projects

10.1186/s12974-021-02235-7

Sex differences and similarities in the neuroimmune response to central administration of poly I:C
Cited by: 14
Author(s): Caitlin K. Posillico, Rosa E. Garcia-Hernandez, Natalie C. Tronson
Software Mentions: 12
Published: over 3 years ago

10.1007/s10120-021-01161-0

A novel combination of serum microRNAs for the detection of early gastric cancer
Cited by: 15
Author(s): Seiichiro Abe, Juntaro Matsuzaki, Kazuki Sudo, Ichiro Oda, Hitoshi Katai, Ken Kato, Satoko Takizawa, Hiromi Sanada, Fumitaka Takeshita, Shumpei Niida, Yutaka Saito, Takahiro Ochiya
Software Mentions: 7
Published: almost 4 years ago

10.1093/jxb/eraa124

Transcriptomics in Erigeron canadensis reveals rapid photosynthetic and hormonal responses to auxin herbicide application
Cited by: 19
Author(s): Cara L. McCauley, Scott A. M. McAdam, Ketaki P. Bhide, Jyothi Thimmapuram, Jo Ann Banks, Bryan G. Young
Software Mentions: 5
Published: almost 5 years ago

10.3390/biom11030449

RNA-seq Characterization of Melanoma Phenotype Switch in 3D Collagen after p38 MAPK Inhibitor Treatment
Cited by: 1
Author(s): Vladimı́r Čermák, Aneta Škarková, Ladislav Merta, Veronika Kolomazníková, Veronika Palušová, Stjepan Uldrijan, Daniel Rösel, Jan Brábek
Software Mentions: 4
Published: almost 4 years ago

10.1186/1471-2164-13-296

ReadqPCR and NormqPCR: R packages for the reading, quality checking and normalisation of RT-qPCR quantification cycle (Cq) data
Cited by: 167
Author(s): James R. Perkins, J. D. K. Dawes, Stephen B. McMahon, David L.H. Bennett, Christine A. Orengo, Matthias Kohl
Software Mentions: 4
Published: almost 13 years ago

10.1038/s41598-017-10861-6

Small ocean temperature increases elicit stage-dependent changes in DNA methylation and gene expression in a fish, the European sea bass
Cited by: 73
Author(s): Dafni Anastasiadi, Noèlia Díaz, Francesc Piferrer
Software Mentions: 4
Published: over 7 years ago

10.1371/journal.pone.0156259

Identification and Validation of Reference Genes for RT-qPCR Studies of Hypoxia in Squamous Cervical Cancer Patients
Cited by: 26
Author(s): Christina S. Fjeldbo, Eva‐Katrine Aarnes, Eirik Malinen, Gunnar B. Kristensen, Heidi Lyng
Software Mentions: 4
Published: over 8 years ago

10.1186/s12866-016-0697-4

Ant mediated redistribution of a xyloglucanase enzyme in fungus gardens of Acromyrmex echinatior
Cited by: 13
Author(s): Pepijn W. Kooij, Johannes Wilhelmus Maria Pullens, Jacobus J. Boomsma, Morten Schiøtt
Software Mentions: 4
Published: over 8 years ago

10.1371/journal.pone.0210273

Identification of whole blood mRNA and microRNA biomarkers of tissue damage and immune function resulting from amphetamine exposure or heat stroke in adult male rats
Cited by: 6
Author(s): Luísa Camacho, Camila S. Silva, Joseph P. Hanig, Robert P. Schleimer, Nysia I. George, John F. Bowyer
Software Mentions: 3
Published: almost 6 years ago

10.1371/journal.pone.0167367

Reversing Age Related Changes of the Laryngeal Muscles by Chronic Electrostimulation of the Recurrent Laryngeal Nerve
Cited by: 21
Author(s): Michael Karbiener, Jonathan C. Jarvis, Justin Perkins, Hermann Lanmüller, Martin Schmoll, Hanna S. Rode, Claus Gerstenberger, Markus Gugatschka
Software Mentions: 3
Published: about 8 years ago

10.1371/journal.pone.0145316

High Throughput qPCR Expression Profiling of Circulating MicroRNAs Reveals Minimal Sex- and Sample Timing-Related Variation in Plasma of Healthy Volunteers
Cited by: 27
Author(s): Catherine Mooney, Rana Raoof, Hany El‐Naggar, Amaya Sanz‐Rodriguez, Eva M. Jiménez-Mateos, David C. Henshall
Software Mentions: 3
Published: about 9 years ago

10.3389/fnins.2021.720778

Cerebrospinal Fluid MicroRNA Changes in Cognitively Normal Veterans With a History of Deployment-Associated Mild Traumatic Brain Injury
Cited by: 3
Author(s): Theresa A. Lusardi, Ursula S. Sandau, Nikita A. Sakhanenko, Sarah Catherine B Baker, Jack Wiedrick, Jodi Lapidus, Murray A. Raskind, Ge Li, Elaine R. Peskind, David J. Galas, Joseph F. Quinn, Julie A. Saugstad
Software Mentions: 3
Published: over 3 years ago

10.7717/peerj.4047

Evaluation of potential reference genes for real-time qPCR analysis in a biparental beetle,<i>Lethrus apterus</i>(Coleoptera: Geotrupidae)
Cited by: 17
Author(s): Nikolett Nagy, Zoltán Németh, Edit Juhász, Szilárd Póliska, R. Rácz, András Kosztolányi, Zoltán Barta
Software Mentions: 3
Published: about 7 years ago

10.1371/journal.pone.0160173

A Versatile Panel of Reference Gene Assays for the Measurement of Chicken mRNA by Quantitative PCR
Cited by: 23
Author(s): Karen Staines, Ambalika Batra, William Mwangi, Helena J. Maier, Steven Van Borm, J. R. Young, Mark Fife, Colin Butter
Software Mentions: 3
Published: over 8 years ago

10.1038/srep32299

Circulating intestine-derived exosomal miR-328 in plasma, a possible biomarker for estimating BCRP function in the human intestines
Cited by: 23
Author(s): Keisuke Gotanda, Tomoyoshi Hirota, Jumpei Saito, Masato Fukae, YU En, Noritomo Izumi, Mariko Deguchi, Miyuki Kimura, Shunji Matsuki, Shin Irie, Ichiro Ieiri
Software Mentions: 2
Published: over 8 years ago

10.1038/s41598-019-40196-3

Selection of suitable reference genes for gene expression analysis in gills and liver of fish under field pollution conditions
Cited by: 15
Author(s): Noemí Rojas‐Hernández, David Véliz, Caren Vega‐Retter
Software Mentions: 2
Published: almost 6 years ago

10.1371/journal.pone.0122515

Reference Gene Validation for RT-qPCR, a Note on Different Available Software Packages
Cited by: 183
Author(s): Ward De Spiegelaere, Jutta Dern-Wieloch, Roswitha Weigel, Valérie Schumacher, Hubert Schorle, Daniel Nettersheim, Martin Bergmann, Ralph Brehm, Sabine Kliesch, Linos Vandekerckhove, Cornelia Fink
Software Mentions: 2
Published: almost 10 years ago

10.3390/ijms21197065

Identification of Acute Myeloid Leukemia Bone Marrow Circulating MicroRNAs
Cited by: 11
Author(s): Douâa Moussa Agha, Rédouane Rouas, Mehdi Najar, Fatima Bouhtit, Najib Naamane, Hussein Fayyad‐Kazan, Dominique Bron, Nathalie Meuleman, Philippe Lewalle, Makram Merimi
Software Mentions: 2
Published: over 4 years ago

10.18632/oncotarget.10485

Identification of a circulating MicroRNA signature to distinguish recurrence in breast cancer patients
Cited by: 61
Author(s): Dezheng Huo, Wendy Clayton, Toshio F. Yoshimatsu, Jianjun Chen, Olufunmilayo I. Olopade
Software Mentions: 2
Published: over 8 years ago

10.1371/journal.pone.0157467

Identification of Reference Genes for Quantitative Gene Expression Studies in a Non-Model Tree Pistachio (Pistacia vera L.)
Cited by: 13
Author(s): Maryam Moazzam Jazi, Effat Ghadirzadeh Khorzoghi, Christopher Botanga, Seyed Mahdi Seyedi
Software Mentions: 2
Published: over 8 years ago

10.1371/journal.pone.0219440

Optimal use of statistical methods to validate reference gene stability in longitudinal studies
Cited by: 35
Author(s): Venkat Krishnan Sundaram, Nirmal Kumar Sampathkumar, Charbel Massaad, Julien Grenier
Software Mentions: 2
Published: over 5 years ago

10.1371/journal.pone.0193076

Selection and validation of reference genes for quantitative gene expression analyses in black locust (Robinia pseudoacacia L.) using real-time quantitative PCR
Cited by: 18
Author(s): Jinxing Wang, Yun Li, Yanzhong Wen, Dongsheng Niu, Ling Wang, Yuhan Sun, Yun Li
Software Mentions: 2
Published: almost 7 years ago

10.1016/j.eururo.2016.02.058

The Expression of Inflammatory Mediators in Bladder Pain Syndrome
Cited by: 42
Author(s): Ifeoma Offiah, Athanasios Didangelos, J. D. K. Dawes, Rufus Cartwright, Vik Khullar, Elizabeth J. Bradbury, SS O'Sullivan, Dic Williams, Iain P. Chessell, Kenny Pallas, Gerry Graham, Barry O’Reilly, Stephen B. McMahon
Software Mentions: 2
Published: over 8 years ago

10.1186/s12967-019-2114-x

Circulating microRNAs as minimal residual disease biomarkers in childhood acute lymphoblastic leukemia
Cited by: 19
Author(s): Andrea Rzepiel, Nóra Kutszegi, András Gézsi, Judit C. Sági, Bálint Egyed, György Péter, Henriett Butz, G Nyírő, Judit Müller, Gabór Kovàcs, Csaba Szalai, Ágnes F. Semsei, Dániel Erdélyi
Software Mentions: 1
Published: about 5 years ago

10.1093/bib/bbv056

Normalization of circulating microRNA expression data obtained by quantitative real-time RT-PCR
Cited by: 203
Author(s): Francesco Marabita, Paola de Candia, A Torri, Jesper Tegnér, Sergio Abrignani, Riccardo L. Rossi
Software Mentions: 1
Published: over 9 years ago

10.1371/journal.pone.0135093

Selection and Evaluation of Tissue Specific Reference Genes in Lucilia sericata during an Immune Challenge
Cited by: 21
Author(s): Andre Baumann, Rüdiger Lehmann, Annika Beckert, Andreas Vilcinskas, Zdeněk Franta
Software Mentions: 1
Published: over 9 years ago

10.1371/journal.pone.0093338

Genome-Wide Transcriptional Profiling of Skin and Dorsal Root Ganglia after Ultraviolet-B-Induced Inflammation
Cited by: 46
Author(s): J. D. K. Dawes, Ana Antunes-Martins, James R. Perkins, Kathryn J. Paterson, Marco Sisignano, RM Schmid, Werner Rust, Tobias Hildebrandt, Gerd Geißlinger, Christine Orengo, David L.H. Bennett, Stephen B. McMahon
Software Mentions: 1
Published: over 10 years ago

10.3389/fnbeh.2015.00145

Programming of stress-related behavior and epigenetic neural gene regulation in mice offspring through maternal exposure to predator odor
Cited by: 76
Author(s): Sophie St-Cyr, Patrick O. McGowan
Software Mentions: 1
Published: over 9 years ago

10.1038/s41598-020-67449-w

Selection and validation of reference genes by RT-qPCR for murine cementoblasts in mechanical loading experiments simulating orthodontic forces in vitro
Cited by: 8
Author(s): Christian Niederau, Rogerio B. Craveiro, Irma Azraq, Julia Brockhaus, Asisa Bastian, Christian Kirschneck, Michael Wolf
Software Mentions: 1
Published: over 4 years ago

10.1038/s41598-020-73125-w

Evaluation of the expression stability of reference genes in Apis mellifera under pyrethroid treatment
Cited by: 10
Author(s): Przemysław Wieczorek, Patryk Frąckowiak, Aleksandra Obrępalska‐Stęplowska
Software Mentions: 1
Published: over 4 years ago

10.1089/ten.tec.2019.0076

Reference Gene Expression in Adipose-Derived Stromal Cells Undergoing Adipogenic Differentiation
Cited by: 2
Author(s): Carla Dessels, Michael Sean Pepper
Software Mentions: 1
Published: over 5 years ago

10.3390/ijms21197328

MicroRNA Expression in the Aqueous Humor of Patients with Diabetic Macular Edema
Cited by: 12
Author(s): Giuseppina Emanuela Grieco, Guido Sebastiani, Chiara M Eandi, Giovanni Neri, Laura Nigi, Noemi Brusco, Romina D’Aurizio, Matteo Posarelli, Tommaso Bacci, Elena De Benedetto, Mario Fruschelli, Maurizio Orlandini, Federico Galvagni, Francesco Dotta, Gian Marco Tosi
Software Mentions: 1
Published: about 4 years ago

10.1186/s12859-020-03743-8

NormiRazor: tool applying GPU-accelerated computing for determination of internal references in microRNA transcription studies
Cited by: 12
Author(s): Szymon Grabia, Urszula Smyczyńska, Konrad Pagacz, Wojciech Fendler
Software Mentions: 1
Published: over 4 years ago

Ecosyste.ms: Papers

Projects: bioconductor: NormqPCR

Papers Mentioning NormqPCR 33