Ecosyste.ms: Papers

An open API service providing mapping between scientific papers and software projects that are mentioned in them.
All mentions data is based on the CZI Software Mentions dataset.

pypi projects 9,932

pypi: poretools
A toolset for working with nanopore sequencing data
Papers that mentioned: 62
pypi: kmeans
python wrapper for basic c implementation of kmeans
Papers that mentioned: 62
pypi: CDS
Access articles, reports and multimedia content in HEP
Papers that mentioned: 61
pypi: distruct
a package to generate 3d molecular structures from distance constraints
Papers that mentioned: 61
pypi: gensim
Python framework for fast Vector Space Modelling
Papers that mentioned: 61
pypi: ti
A silly simple time tracker
Papers that mentioned: 61
pypi: make
Create project layout from jinja2 templates.
Papers that mentioned: 60
pypi: Lumpy

Papers that mentioned: 60
pypi: MICA
Mutual Information-based Clustering Analysis tool designed for scRNA-seq data
Papers that mentioned: 60
pypi: pca
pca: A Python Package for Principal Component Analysis.
Papers that mentioned: 60
pypi: monocle
An async programming framework with a blocking look-alike syntax
Papers that mentioned: 60
pypi: mysql
Virtual package for MySQL-python
Papers that mentioned: 59
pypi: Resource
A Python library concentrated on the Resource layer of RESTful APIs.
Papers that mentioned: 59
pypi: Evolve
Web interface for the Volatility Memory Forensics Framework
Papers that mentioned: 59
pypi: Detector
vunerable rsa keys detector
Papers that mentioned: 59
pypi: sleuth

Papers that mentioned: 59
pypi: seq
Generic sequence manipulation functions
Papers that mentioned: 58
pypi: Felix
A simple printer of nester lists
Papers that mentioned: 58
pypi: cctbx
The Computational Crystallography Toolbox
Papers that mentioned: 58
pypi: bzip2
Papers that mentioned: 58
pypi: grep
String lookup has never been prettier.
Papers that mentioned: 57
pypi: TPP
Text PreProcessing libraries
Papers that mentioned: 57
pypi: github
An asynchronous python wrapper around the GitHub API
Papers that mentioned: 57
pypi: map
map applies a command to files/folders at a certain path.
Papers that mentioned: 56
pypi: barrnap
python package for barrnap
Papers that mentioned: 56
pypi: PTP
PTP parses and ranks the discoveries listed in security tool reports.
Papers that mentioned: 56
pypi: Watershed
An image segmentation algorithm based on the watershed paradigm
Papers that mentioned: 55
pypi: Tinker

Papers that mentioned: 55
pypi: the
rspec/should.js assertion style for python test
Papers that mentioned: 55
pypi: ICP
A Python module for registering a photo with a database image of the same scene
Papers that mentioned: 55
pypi: hmm
Functions for inference on HMMs
Papers that mentioned: 55
pypi: lmfit
Least-Squares Minimization with Bounds and Constraints
Papers that mentioned: 55
pypi: 4
It's just a name snipe.
Papers that mentioned: 55
pypi: CouchDB
Python library for working with CouchDB
Papers that mentioned: 55
pypi: infernal
Core library for the Infernal eSports Analytics Infernal library.
Papers that mentioned: 54
pypi: find
find files and dirs
Papers that mentioned: 54
pypi: TRA
Trust region algorithms for non-linear optimisation.
Papers that mentioned: 54
pypi: Counter
Counter package defines the "counter.Counter" class similar to bags or multisets in other languages.
Papers that mentioned: 54
pypi: paml
A Pythonic transpiler for HTML/XML
Papers that mentioned: 54
pypi: org
Papers that mentioned: 54
pypi: x
UNKNOWN
Papers that mentioned: 53
pypi: Allegro
A python backend integration framework
Papers that mentioned: 53
pypi: lsr
api de reconnaissance vocale avec une magnifique voix feminine
Papers that mentioned: 53
pypi: ReliefF
ReliefF feature selection algorithms
Papers that mentioned: 53
pypi: HSV
HSV conversion tools
Papers that mentioned: 53
pypi: guppy
Guppy-PE -- A Python Programming Environment
Papers that mentioned: 53
pypi: EPP
EPP Client for Python
Papers that mentioned: 53
pypi: Ocean
GUI library with opengl renderer
Papers that mentioned: 53
pypi: Micro
Celery platform to create microservices
Papers that mentioned: 53
pypi: app
a simple egg
Papers that mentioned: 52
pypi: Cassandra
Generated Thrift interface to the Cassandra database
Papers that mentioned: 52
pypi: MissForest
Best imputation method.
Papers that mentioned: 52
pypi: Lego
Lego
Papers that mentioned: 52
pypi: ffmpeg
ffmpeg python package url [https://github.com/jiashaokun/ffmpeg]
Papers that mentioned: 52
pypi: network
A very simple networking library written by David Whale (@whaleygeek).
Papers that mentioned: 51
pypi: like
A simple printer of nested lists
Papers that mentioned: 51
pypi: forecast
Implemetion of Book 'forcasting priceples and practise'
Papers that mentioned: 51
pypi: CIM
Python implementation of the Common Information Model.
Papers that mentioned: 51
pypi: Demeter
UNKNOWN
Papers that mentioned: 51
pypi: VESPA
Calculate astrophysical false positive probabilities for transiting exoplanet signals
Papers that mentioned: 51
pypi: trinity
The Trinity client for the Ethereum network
Papers that mentioned: 51
pypi: COMPAS
The COMPAS framework
Papers that mentioned: 50
pypi: plspm
A library implementing the Partial Least Squares Path Model algorithm
Papers that mentioned: 50
pypi: metaphor
Neural network toolbox
Papers that mentioned: 50
pypi: e
Evaluate and display command line expressions with python -me expr
Papers that mentioned: 50
pypi: Mind
Mind is library for games in Python
Papers that mentioned: 50
pypi: io

Papers that mentioned: 50
pypi: QPS
Q Publishing System (QPS) is a framework for custom Content Management Systems
Papers that mentioned: 50
pypi: open
A mutli-purpose file opener
Papers that mentioned: 50
pypi: msa
Maven settings administrator
Papers that mentioned: 50
pypi: simuPOP
Forward-time population genetics simulation environment
Papers that mentioned: 49
pypi: h5py
Read and write HDF5 files from Python
Papers that mentioned: 49
pypi: Extractor
bindings for GNU libextractor, the metadata extractor
Papers that mentioned: 49
pypi: dynamicTreeCut
Dynamic Tree Cut
Papers that mentioned: 49
pypi: pyradiomics
Radiomics features library for python
Papers that mentioned: 49
pypi: coloc
the COLOC method by Giambartolomei et al.
Papers that mentioned: 49
pypi: CAL
Package dealing with date, time, and calendars.
Papers that mentioned: 49
pypi: builder
A framework for building batch processing pipelines
Papers that mentioned: 49
pypi: dbscan
Theoretically efficient and practical parallel DBSCAN
Papers that mentioned: 49
pypi: pybedtools
Wrapper around BEDTools for bioinformatics work
Papers that mentioned: 48
pypi: wxPython
Cross platform GUI toolkit for Python, "Phoenix" version
Papers that mentioned: 48
pypi: ipyrad
Interactive assembly and analysis of RADseq data sets
Papers that mentioned: 48
pypi: StandardScaler
Standard scale your data
Papers that mentioned: 48
pypi: table
Two-dimensional tables backed by Numpy with named rows and columns.
Papers that mentioned: 48
pypi: Ada
Better living with Python scripts & libraries.
Papers that mentioned: 48
pypi: webserver
Simple to use CLI for setting up nginx webserver in Docker Swarm and adding websites' configs, proxies and static files
Papers that mentioned: 48
pypi: msprime
Simulate genealogical trees and genomic sequence data using population genetic models
Papers that mentioned: 48
pypi: Wanderer
A roaming CG project.
Papers that mentioned: 48
pypi: sh
Python subprocess replacement
Papers that mentioned: 48
pypi: SSAP
tonylab
Papers that mentioned: 48
pypi: liblinear
Python bindings for liblinear
Papers that mentioned: 48
pypi: plus
A tool for helping you config, visualize, log and debug deep learning.
Papers that mentioned: 48
pypi: gdata
Python client library for Google data APIs
Papers that mentioned: 47
pypi: pymatgen
Python Materials Genomics is a robust materials analysis code that defines core object representations for structures and molecules with support for many electronic structure codes. It is currently the core analysis code powering the Materials Project (https://materialsproject.org).
Papers that mentioned: 47
pypi: minimap
"Generate minimaps of your code"
Papers that mentioned: 47
pypi: scan
Scan tool
Papers that mentioned: 47
pypi: EPT
Use tor as proxy to bypass IP limit querys
Papers that mentioned: 47
pypi: pro
UNKNOWN
Papers that mentioned: 47
pypi: lite
Analouge Light.js on Python
Papers that mentioned: 47
pypi: biomart
Python API that consumes the biomart webservice
Papers that mentioned: 46