Ecosyste.ms: Papers

An open API service providing mapping between scientific papers and software projects that are mentioned in them.
All mentions data is based on the CZI Software Mentions dataset.

pypi projects 9,932

pypi: pyLDAvis
Interactive topic model visualization. Port of the R package.
Papers that mentioned: 15
pypi: lda
Topic modeling with latent Dirichlet allocation
Papers that mentioned: 15
pypi: IGC

Papers that mentioned: 15
pypi: csv
Fast CSV Parser for Python
Papers that mentioned: 15
pypi: PLEASE
Software for the analysis of Low Energy Electron Microscopy data
Papers that mentioned: 15
pypi: a
Python Distribution Utilities
Papers that mentioned: 15
pypi: What
A helper for testing process output
Papers that mentioned: 15
pypi: networktools
NetworkTools are some special functions to help with software developing
Papers that mentioned: 15
pypi: 16

Papers that mentioned: 15
pypi: genesis
Implementation of FreeSWITCH Event Socket protocol with asyncio
Papers that mentioned: 15
pypi: mcr

Papers that mentioned: 15
pypi: scikit-posthocs
Statistical post-hoc analysis and outlier detection algorithms
Papers that mentioned: 14
pypi: flow
columnflow
Papers that mentioned: 14
pypi: iml
Interpretable Machine Learning (iML) package. Explain the predictions of any model.
Papers that mentioned: 14
pypi: gseapy
Gene Set Enrichment Analysis in Python
Papers that mentioned: 14
pypi: manta
A Python SDK for Joyent's Manta service
Papers that mentioned: 14
pypi: local
To browse local files.
Papers that mentioned: 14
pypi: Markdown
Python implementation of John Gruber's Markdown.
Papers that mentioned: 14
pypi: FireWorks
FireWorks workflow software
Papers that mentioned: 14
pypi: MDP
MDP is a Python library for building complex data processing software by combining widely used machine learning algorithms into pipelines and networks.
Papers that mentioned: 14
pypi: METER
Multi-state Estimates for Time-to-Event Research
Papers that mentioned: 14
pypi: Mikado
A Python3 annotation program to select the best gene model in each locus
Papers that mentioned: 14
pypi: Party
Lightweight Python client to the Artifactory API.
Papers that mentioned: 14
pypi: Prestige
Pylot is a Flask extension that adds structure and map your views and templates together for rapid application development
Papers that mentioned: 14
pypi: nut
Network utility... things like a UDP/TCP relay.
Papers that mentioned: 14
pypi: dammit
dammit!
Papers that mentioned: 14
pypi: deal
**Deal** is a Python library for [design by contract][wiki] (DbC) programming.
Papers that mentioned: 14
pypi: uWSGI
The uWSGI server
Papers that mentioned: 14
pypi: yhat
Python client for Yhat (http://yhat.com/)
Papers that mentioned: 14
pypi: microsoft
This package name is reserved by Microsoft Corporation
Papers that mentioned: 14
pypi: simba
Semantic similarity measures from Babylon Health
Papers that mentioned: 14
pypi: processing
Package for using processes which mimics the threading module
Papers that mentioned: 14
pypi: spike

Papers that mentioned: 14
pypi: opencv-python
Wrapper package for OpenCV python bindings.
Papers that mentioned: 14
pypi: SpatialDE
Spatial and Temporal DE test
Papers that mentioned: 14
pypi: MobileElementFinder
Mobile Genetic Element prediction
Papers that mentioned: 14
pypi: EukRep
Classification of Eukaryotic and Prokaryotic sequences from metagenomic datasets
Papers that mentioned: 14
pypi: calibrate
Interpolate using a calibration curve
Papers that mentioned: 14
pypi: molecular
A toolkit for molecular dynamics simulations
Papers that mentioned: 14
pypi: statannot
add statistical annotations on an existing boxplot/barplot generated by seaborn.
Papers that mentioned: 14
pypi: ff
A kit for files finding
Papers that mentioned: 14
pypi: Taobao

Papers that mentioned: 14
pypi: sra
A simple deploy tool
Papers that mentioned: 14
pypi: dotter
Dotter is a graphviz wrapper for Python 2 and 3
Papers that mentioned: 14
pypi: Boris
Easily access and search Barclays bike availability in London, UK.
Papers that mentioned: 14
pypi: nl
A python library that provides a production system with an API modelled on the natural language
Papers that mentioned: 14
pypi: Florence
A Python based computational framework for integrated computer aided design, curvilinear mesh generation and finite and boundary element methods for linear and nonlinear analysis of solids and coupled multiphysics problems
Papers that mentioned: 14
pypi: pdftotext
Simple PDF text extraction
Papers that mentioned: 14
pypi: fastphase
Python implementation of the fastPHASE model
Papers that mentioned: 14
pypi: gs
A minimalistic Google Storage client
Papers that mentioned: 14
pypi: micca
micca - MICrobial Community Analysis
Papers that mentioned: 14
pypi: Pebble
Threading and multiprocessing eye-candy.
Papers that mentioned: 14
pypi: pmx
Python Toolbox structure file editing and writing simulation setup/analysis tools
Papers that mentioned: 14
pypi: AIDE
AguaClara Infrastructure Design Engine
Papers that mentioned: 14
pypi: EB
Ensemble Builder
Papers that mentioned: 14
pypi: protocols
Papers that mentioned: 14
pypi: mri
Papers that mentioned: 14
pypi: RPD
Asynchronous Discord API Wrapper For Python
Papers that mentioned: 14
pypi: gneiss
Compositional data analysis tools and visualizations
Papers that mentioned: 14
pypi: exp
Python tool do design and run experiments with global optimisation and grid search
Papers that mentioned: 14
pypi: Wrapper
A wrapper around several APIs. Response is a request object, which is much extendable for custom error handling. The Available APIs are: EANData Locu Spoonacular Walmart Zomato
Papers that mentioned: 14
pypi: Quixote
A small and flexible Python Web application framework
Papers that mentioned: 14
pypi: ENN
Python Implementation of the Extended Nearest Neighbor Algorithm (ENN)
Papers that mentioned: 14
pypi: ANNarchy
Artificial Neural Networks architect
Papers that mentioned: 14
pypi: POET
Calculate the orbital evolution of a planet-star system.
Papers that mentioned: 14
pypi: pylab
Papers that mentioned: 14
pypi: neo4j
Neo4j Bolt driver for Python
Papers that mentioned: 14
pypi: Reuters
Reuters ticker information retriever for Python
Papers that mentioned: 14
pypi: PSCAD
A network toolkit that can be used to scan, sniff and discover hosts.
Papers that mentioned: 14
pypi: me
me
Papers that mentioned: 14
pypi: picardtools
python3 interface with Picard Tools from Broad institute
Papers that mentioned: 14
pypi: reg
Clever dispatch
Papers that mentioned: 14
pypi: EINSTEIN
Useful speech recognition and transcription related library for Indian languages.
Papers that mentioned: 14
pypi: puma
Python Unified Multi-tasking API (PUMA)
Papers that mentioned: 14
pypi: motif
motif - Python module written by Wu Fuheng
Papers that mentioned: 14
pypi: pm
Command-line utility to manage development projects
Papers that mentioned: 14
pypi: vtk
VTK is an open-source toolkit for 3D computer graphics, image processing, and visualization
Papers that mentioned: 14
pypi: entropy
entropy is a command line friend that helps you reduce entropy in your life
Papers that mentioned: 14
pypi: yaml
Papers that mentioned: 14
pypi: sPyNNaker
Tools for simulating neural models generated using PyNN 0.9 on the SpiNNaker platform
Papers that mentioned: 14
pypi: TEtranscripts
Tools for estimating differential enrichment of Transposable Elements and other highly repetitive regions
Papers that mentioned: 14
pypi: NanoSV
Structural variation detection tool for Oxford Nanopore data.
Papers that mentioned: 14
pypi: evaluation

Papers that mentioned: 14
pypi: SCSA
A novel algorithm for signal representation and denoising
Papers that mentioned: 14
pypi: BeautifulSoup
Screen-scraping library
Papers that mentioned: 14
pypi: glpk
PyGLPK, a Python module encapsulating GLPK.
Papers that mentioned: 14
pypi: Velox
Batteries-included tooling for handling promotion, versioning, and zero-downtime requirments of Machine Learning models in production.
Papers that mentioned: 14
pypi: Ethos

Papers that mentioned: 14
pypi: cobweb
A scaffold for building and deploying powerful and robust webapps
Papers that mentioned: 13
pypi: clust
Optimised consensus clustering of multiple heterogeneous datasets
Papers that mentioned: 13
pypi: changepoint
A Bayesian change point library
Papers that mentioned: 13
pypi: c3d
A library for manipulating C3D binary files
Papers that mentioned: 13
pypi: analytics
Library for efficiently adding analytics to your project.
Papers that mentioned: 13
pypi: Bambino
Bambino
Papers that mentioned: 13
pypi: Orpheus
An intelligent music retrieval engine
Papers that mentioned: 13
pypi: Arrays
Python library for storing and reading stored arrays.
Papers that mentioned: 13
pypi: OMM
Object Model Mapper for Python-based web apps and/or APIs
Papers that mentioned: 13
pypi: sensitivity
Python Sensitivity Analysis - Gradient DataFrames and Hex-Bin Plots
Papers that mentioned: 13
pypi: simulate
HuggingFace community-driven open-source library of simulation environments
Papers that mentioned: 13
pypi: CDR
这是第一个对外发布的模块
Papers that mentioned: 13