Ecosyste.ms: Papers

An open API service providing mapping between scientific papers and software projects that are mentioned in them.
All mentions data is based on the CZI Software Mentions dataset.

Projects: pypi: dotter

https://packages.ecosyste.ms/registries/pypi.org/packages/dotter

Dotter is a graphviz wrapper for Python 2 and 3
6 versions
Latest release: over 8 years ago
23 downloads last month

Papers Mentioning dotter 14

Strain-specific copy number variation in the intelectin locus on the 129 mouse chromosome 1
Cited by: 16
Author(s): Zen H. Lu, Alex di Domenico, Steven H. Wright, Pamela Knight, Bruce Whitelaw, Alan D. Pemberton
Software Mentions: 4
Published: over 13 years ago

10.1371/journal.pone.0199902

Annotation, classification, genomic organization and expression of the Vitis vinifera CYPome
Cited by: 8
Author(s): Tina Ilc, Gautier Arista, Raquel Tavares, Nicolas Navrot, Éric Duchêne, Amandine Velt, Frédéric Choulet, Etienne Paux, Marc Fischer, David R. Nelson, Philippe Hugueney, Danièle Werck‐Reichhart, Camille Rustenholz
Software Mentions: 4
Published: about 6 years ago

10.1186/1471-2164-13-166

Mitochondrial genome evolution in species belonging to the Phialocephala fortinii s.l. - Acephala applanata species complex
Cited by: 33
Author(s): Angelo Duò, Rémy Bruggmann, Stefan Zoller, Matthias Bernt, Christoph R. Grünig
Software Mentions: 3
Published: over 12 years ago

10.1186/1471-2164-8-427

Repetitive DNA in the pea (Pisum sativum L.) genome: comprehensive characterization using 454 sequencing and comparison to soybean and Medicago truncatula
Cited by: 260
Author(s): Jiří Macas, Pavel Neumann, Alice Navrátilová
Software Mentions: 3
Published: over 17 years ago

10.1371/journal.pgen.1004403

Rapid Evolution of PARP Genes Suggests a Broad Role for ADP-Ribosylation in Host-Virus Conflicts
Cited by: 139
Author(s): Matthew D. Daugherty, Janet M. Young, Julie A. Kerns, Harmit S. Malik
Software Mentions: 3
Published: over 10 years ago

10.1038/s41598-017-16171-1

Long-read genome sequence assembly provides insight into ongoing retroviral invasion of the koala germline
Cited by: 31
Author(s): Matthew Hobbs, Andrew King, Ryan Salinas, Zhiliang Chen, Kyriakos Tsangaras, Alex D. Greenwood, Rebecca N. Johnson, Katherine Belov, Marc R. Wilkins, Peter Timms
Software Mentions: 3
Published: almost 7 years ago

10.4049/jimmunol.1401980

Definition of the Cattle Killer Cell Ig–like Receptor Gene Family: Comparison with Aurochs and Human Counterparts
Cited by: 26
Author(s): Nicholas D. Sanderson, Paul J. Norman, Lisbeth A. Guethlein, Shirley A. Ellis, Christina L. Williams, Matthew Breen, Steven D. E. Park, David A. Magee, Farbod Babrzadeh, Andrew Warry, Michael Watson, Daniel G. Bradley, David E. MacHugh, Peter Parham, John A. Hammond
Software Mentions: 3
Published: almost 10 years ago

10.1186/1471-2164-9-595

Genome wide survey, discovery and evolution of repetitive elements in three Entamoeba species
Cited by: 53
Author(s): Hernán Lorenzi, Mathangi Thiagarajan, Brian J. Haas, Jennifer Wortman, Neil Hall, Elisabet Caler
Software Mentions: 2
Published: almost 16 years ago

10.1186/1471-2229-10-204

Repetitive part of the banana (Musa acuminata) genome investigated by low-depth 454 sequencing
Cited by: 85
Author(s): Eva Hřibová, Pavel Neumann, Takashi Matsumoto, Nicolás Roux, Jiří Macas, Jaroslav Doležel
Software Mentions: 2
Published: over 14 years ago

10.1371/journal.pone.0054808

Molecular Analysis and Genomic Organization of Major DNA Satellites in Banana (Musa spp.)
Cited by: 44
Author(s): Jana Čížková, Eva Hřibová, Lenka Humplíková, Pavla Christelová, Pavla Suchánková, Jaroslav Doležel
Software Mentions: 1
Published: over 11 years ago

10.1371/journal.pcbi.0010060

A Guild of 45 CRISPR-Associated (Cas) Protein Families and Multiple CRISPR/Cas Subtypes Exist in Prokaryotic Genomes
Cited by: 822
Author(s): Daniel H. Haft, Jeremy D. Selengut, Emmanuel F. Mongodin, Karen E. Nelson
Software Mentions: 1
Published: almost 19 years ago

10.1186/1471-2164-13-103

Ancestral synteny shared between distantly-related plant species from the asterid (Coffea canephora and Solanum Sp.) and rosid (Vitis vinifera) clades
Cited by: 26
Author(s): Romain Guyot, Florent Lefebvre-Pautigny, Christine Tranchant‐Dubreuil, Michel Rigoreau, Perla Hamon, Thierry Leroy, Serge Hamon, Valérie Poncet, Dominique Crouzillat, Alexandre de Kochko
Software Mentions: 1
Published: over 12 years ago

10.1186/1471-2164-10-192

Genomic analysis reveals extensive gene duplication within the bovine TRB locus
Cited by: 38
Author(s): Timothy Connelley, Jan Aerts, Andy Law, W. Ivan Morrison
Software Mentions: 1
Published: over 15 years ago

10.1038/srep41426

A comprehensive analysis of the germline and expressed TCR repertoire in White Peking duck
Cited by: 12
Author(s): Zhi Min Yang, Yuena Sun, Yonghe Ma, Zhenrong Li, Yu Zhao, Liming Ren, Haitang Han, Yuming Jiang, Yaofeng Zhao
Software Mentions: 1
Published: over 7 years ago