Ecosyste.ms: Papers

An open API service providing mapping between scientific papers and software projects that are mentioned in them.
All mentions data is based on the CZI Software Mentions dataset.

Projects: pypi: simulate

https://packages.ecosyste.ms/registries/pypi.org/packages/simulate

HuggingFace community-driven open-source library of simulation environments
7 versions
Latest release: about 2 years ago
96 downloads last month

Papers Mentioning simulate 13

On the cross-population generalizability of gene expression prediction models
Cited by: 34
Author(s): Kevin L. Keys, Angel C. Y. Mak, Marquitta J. White, Walter L. Eckalbar, Andrew Dahl, Joel Mefford, Anna V. Mikhaylova, María G. Contreras, Jennifer R. Elhawary, Celeste Eng, Donglei Hu, Scott Huntsman, Sam S. Oh, Sandra Salazar, Michael A. LeNoir, Jimmie C. Ye, Timothy A. Thornton, Noah Zaitlen, Esteban G. Burchard, Christopher R. Gignoux
Software Mentions: 16
Published: over 4 years ago

10.1002/ece3.4823

Animal movement tools (amt): R package for managing tracking data and conducting habitat selection analyses
Cited by: 274
Author(s): Johannes Signer, John Fieberg, Tal Avgar
Software Mentions: 10
Published: almost 6 years ago

10.3389/fninf.2015.00019

ANNarchy: a code generation approach to neural simulations on parallel hardware
Cited by: 65
Author(s): Julien Vitay, Helge Ülo Dinkelbach, Fred H. Hamker
Software Mentions: 9
Published: over 9 years ago

10.1107/S2052252518000519

Internal protein motions in molecular-dynamics simulations of Bragg and diffuse X-ray scattering
Cited by: 23
Author(s): Michael E. Wall
Software Mentions: 5
Published: almost 7 years ago

10.1371/journal.pcbi.1003234

ToPS: A Framework to Manipulate Probabilistic Models of Sequence Data
Cited by: 4
Author(s): André Yoshiaki Kashiwabara, Ígor Bonadio, Vitor Onuchic, Felipe Amado, Rafael Mathias, Alan Mitchell Durham
Software Mentions: 4
Published: about 11 years ago

10.1186/s12859-018-2279-y

Matataki: an ultrafast mRNA quantification method for large-scale reanalysis of RNA-Seq data
Cited by: 8
Author(s): Yasunobu Okamura, Kengo Kinoshita
Software Mentions: 4
Published: over 6 years ago

10.1186/1471-2105-15-237

Simulate_PCR for amplicon prediction and annotation from multiplex, degenerate primers and probes
Cited by: 24
Author(s): Shea N. Gardner, Tom Slezak
Software Mentions: 3
Published: over 10 years ago

10.3390/plants9101358

Coupled Gas-Exchange Model for C4 Leaves Comparing Stomatal Conductance Models
Cited by: 5
Author(s): Kyungdahm Yun, Dennis Timlin, Sung Hyun Kim
Software Mentions: 2
Published: about 4 years ago

10.1155/2014/101894

Multiplex Degenerate Primer Design for Targeted Whole Genome Amplification of Many Viral Genomes
Cited by: 12
Author(s): Shea N. Gardner, Crystal Jaing, Maher Elsheikh, José Peña, David Hysom, Monica K. Borucki
Software Mentions: 1
Published: over 10 years ago

10.1371/journal.pone.0206537

A coupled recreational anglers’ decision and fish population dynamics model
Cited by: 2
Author(s): Masami Fujiwara, Jesse D. Backstrom, Richard T. Woodward
Software Mentions: 1
Published: about 6 years ago

10.3390/pathogens9110875

Mycoplasma bovis in Nordic European Countries: Emergence and Dominance of a New Clone
Cited by: 15
Author(s): Florence Tardy, Anna Aspán, Tiina Autio, Anne Ridley, Agnès Tricot, Adélie Colin, Tarja Pohjanvirta, Bregtje Smid, Frank Harders, Mikkel Lindegaard, Klara Tølbøll Lauritsen, Ulrike Lyhs, Henk J. Wisselink, Mikael Lenz Strube
Software Mentions: 1
Published: about 4 years ago

10.1186/s12859-018-2260-9

HGT-ID: an efficient and sensitive workflow to detect human-viral insertion sites using next-generation sequencing data
Cited by: 14
Author(s): Saurabh Baheti, Xiaojia Tang, Daniel R. O’Brien, Nicholas Chia, Lewis R. Roberts, Heidi Nelson, Judy C. Boughey, Liewei Wang, Matthew P. Goetz, Jean Pierre A. Kocher, Krishna R. Kalari
Software Mentions: 1
Published: over 6 years ago

10.1155/2014/720585

Screening of Viral Pathogens from Pediatric Ileal Tissue Samples after Vaccination
Cited by: 4
Author(s): Laura Hewitson, James B. Thissen, Shea N. Gardner, Kevin McLoughlin, Margaret K. Glausser, Crystal Jaing
Software Mentions: 1
Published: almost 11 years ago