Ecosyste.ms: Papers

An open API service providing mapping between scientific papers and software projects that are mentioned in them.
All mentions data is based on the CZI Software Mentions dataset.

Papers: 10.1371/journal.pgen.1008927

https://doi.org/10.1371/journal.pgen.1008927

Cited by: 34
Author(s): Kevin L. Keys, Angel C. Y. Mak, Marquitta J. White, Walter L. Eckalbar, Andrew Dahl, Joel Mefford, Anna V. Mikhaylova, María G. Contreras, Jennifer R. Elhawary, Celeste Eng, Donglei Hu, Scott Huntsman, Sam S. Oh, Sandra Salazar, Michael A. LeNoir, Jimmie C. Ye, Timothy A. Thornton, Noah Zaitlen, Esteban G. Burchard, Christopher R. Gignoux
Published: almost 4 years ago

Software Mentions 16

bioconductor: annotate
Annotation for microarrays
Papers that mentioned: 36
bioconductor: biomaRt
Interface to BioMart databases (i.e. Ensembl)
Papers that mentioned: 446
bioconductor: preprocessCore
A collection of pre-processing functions
Papers that mentioned: 146
cran: argparser
Command-Line Argument Parser
Papers that mentioned: 2
cran: assertthat
Easy Pre and Post Assertions
Papers that mentioned: 6
cran: doParallel
Foreach Parallel Adaptor for the 'parallel' Package
Papers that mentioned: 90
cran: ggplot2
Create Elegant Data Visualisations Using the Grammar of Graphics
Papers that mentioned: 11,441
cran: glmnet
Lasso and Elastic-Net Regularized Generalized Linear Models
Papers that mentioned: 1,607
cran: knitr
A General-Purpose Package for Dynamic Report Generation in R
Papers that mentioned: 157
cran: optparse
Command Line Option Parser
Papers that mentioned: 15
cran: SMR
Externally Studentized Midrange Distribution
Papers that mentioned: 65
cran: tidyverse
Easily Install and Load the 'Tidyverse'
Papers that mentioned: 1,023
pypi: annotate
Decorator to set a function's __annotations__ like Py3.
Papers that mentioned: 36
pypi: glmnet
Python wrapper for glmnet
Papers that mentioned: 1,607
pypi: PACE
Data Quality of Experimental Data
Papers that mentioned: 13,779
pypi: simulate
HuggingFace community-driven open-source library of simulation environments
Papers that mentioned: 13