Ecosyste.ms: Papers

An open API service providing mapping between scientific papers and software projects that are mentioned in them.
All mentions data is based on the CZI Software Mentions dataset.

Projects: pypi: MobileElementFinder

https://packages.ecosyste.ms/registries/pypi.org/packages/MobileElementFinder

Mobile Genetic Element prediction
9 versions
Latest release: over 1 year ago
69 downloads last month

Papers Mentioning MobileElementFinder 14

10.1038/s41598-021-93970-7

Genomic evolution of antimicrobial resistance in Escherichia coli
Cited by: 19
Author(s): Pimlapas Leekitcharoenphon, Markus Johansson, Patrick Munk, Burkhard Malorny, Magdalena Skarżyńska, Katharina Wadepohl, Gabriel Moyano, Ayla Hesp, Kees Veldman, Alex Bossers, Magdalena Zając, Dariusz Wasyl, Pascal Sandérs, B. Gonzales-Zorn, Michael S.M. Brouwer, Jaap A. Wagenaar, Dick Heederik, Dik Mevius, Frank Møller Aarestrup
Software Mentions: 6
Published: about 3 years ago

10.3390/microorganisms9091906

Comparative Genomic Analysis of Novel Bifidobacterium longum subsp. longum Strains Reveals Functional Divergence in the Human Gut Microbiota
Cited by: 9
Author(s): Romina Díaz, Alexis Torres-Miranda, Guillermo Orellana, Daniel Garrido
Software Mentions: 5
Published: about 3 years ago

10.1371/journal.pone.0239924

Clinical and molecular characteristics of carbapenem non-susceptible Escherichia coli: A nationwide survey from Oman
Cited by: 16
Author(s): Hissa Al-Farsi, Angela Camporeale, Karolina Ininbergs, Saleh Al-Azri, Zakariya Al-Muharrmi, Amina Al-Jardani, Christian G. Giske
Software Mentions: 3
Published: almost 4 years ago

10.3389/fmicb.2020.519169

Distribution of Beta-Lactamase Producing Gram-Negative Bacterial Isolates in Isabela River of Santo Domingo, Dominican Republic
Cited by: 2
Author(s): Víctor V. Calderón, Roberto Bonnelly, Camila Del Rosario, Albert Duarte, Rafael A. Baraúna, Rommel Thiago Jucá Ramos, Omar Paíno Perdomo, Luis Francisco, Edian F. Franco
Software Mentions: 2
Published: over 3 years ago

10.3389/fmicb.2021.656306

Genomic Analysis of Antibiotic-Resistant Staphylococcus epidermidis Isolates From Clinical Sources in the Kwazulu-Natal Province, South Africa
Cited by: 9
Author(s): Jonathan Asante, Bakoena Ashton Hetsa, Daniel G. Amoako, Akebe Luther King Abia, Linda A. Bester, Sabiha Y. Essack
Software Mentions: 2
Published: about 3 years ago

10.3390/microorganisms8111648

Whole-Genome Sequence of Aeromonas hydrophila CVM861 Isolated from Diarrhetic Neonatal Swine
Cited by: 6
Author(s): Toni L. Poole, Wayne Schlosser, Robin C. Anderson, Keri N. Norman, Ross C. Beier, David J. Nisbet
Software Mentions: 1
Published: almost 4 years ago

10.3390/antibiotics10060645

Compared with Cotrimoxazole Nitroxoline Seems to Be a Better Option for the Treatment and Prophylaxis of Urinary Tract Infections Caused by Multidrug-Resistant Uropathogens: An In Vitro Study
Cited by: 5
Author(s): Ulrich Dobrindt, Haleluya Wami, Torsten Schmidt-Wieland, Daniela Bertsch, K. Oberdorfer, Herbert Hof
Software Mentions: 1
Published: over 3 years ago

10.1099/acmi.0.000240

An unusual case of infective spondylodiscitis caused by Campylobacter fetus subsp. fetus: molecular characterization by whole-genome sequencing
Cited by: 1
Author(s): Dhiviya Prabaa, S.S. Jaya Lakshmi, John Antony Jude Prakash, Kenny Samuel David, Vijay Alagar, Balaji Veeraraghavan
Software Mentions: 1
Published: about 3 years ago

10.3389/fmicb.2021.592291

Plasmid-Borne and Chromosomal ESBL/AmpC Genes in Escherichia coli and Klebsiella pneumoniae in Global Food Products
Cited by: 25
Author(s): Paula Kurittu, Banafsheh Khakipoor, Maria Aarnio, Suvi Nykäsenoja, Michael S.M. Brouwer, Anna Liisa Myllyniemi, Elina Vatunen, Annamari Heikinheimo
Software Mentions: 1
Published: over 3 years ago

10.3390/antibiotics10080980

Environmental Surveillance and Characterization of Antibiotic Resistant Staphylococcus aureus at Coastal Beaches and Rivers on the Island of Hawaiʻi
Cited by: 9
Author(s): Tyler Gerken, Marilyn C. Roberts, Philip Dykema, Geoff Melly, Darren Lucas, Vanessa De Los Santos, J Valdéz González, Patrick Butaye, Tracy N. Wiegner
Software Mentions: 1
Published: about 3 years ago

10.3389/fmicb.2021.694922

Profiling the Virulence and Antibiotic Resistance Genes of Cronobacter sakazakii Strains Isolated From Powdered and Dairy Formulas by Whole-Genome Sequencing
Cited by: 15
Author(s): Julio Parra‐Flores, Ondřej Holý, Francisca Riffo, Sarah Lepuschitz, Eduard Maury‐Sintjago, Alejandra Rodríguez‐Fernández, Ariadnna Cruz‐Córdova, Juan Xicohtencatl‐Cortes, Jetsi Mancilla-Rojano, Miriam Troncoso, Guillermo Figueroa, Werner Ruppitsch, Stephen J. Forsythe
Software Mentions: 1
Published: about 3 years ago

10.3389/fmicb.2020.592223

Extended-Spectrum β-Lactamases in Human Isolates of Multidrug-Resistant Non-typhoidal Salmonella enterica
Cited by: 9
Author(s): Anahit Sedrakyan, Zhanna A. Ktsoyan, Karine A. Arakelova, Magdalina Zakharyan, Alvard Hovhannisyan, Zaruhi Gevorgyan, Armine Mnatsakanyan, Elene Kakabadze, Khatuna Makalatia, Ніна Чанішвілі, Jean-Paul Pirnay, Arsen Arakelyan, Rustam Aminov
Software Mentions: 1
Published: over 3 years ago

10.3390/genes12070951

Genomic Investigation of Carbapenem-Resistant Klebsiella pneumonia Colonization in an Intensive Care Unit in South Africa
Cited by: 7
Author(s): Osama Madni, Daniel G. Amoako, Akebe Luther King Abia, J Rout, Sabiha Y. Essack
Software Mentions: 1
Published: about 3 years ago

10.3390/microorganisms9071383

Clostridioides difficile as a Dynamic Vehicle for the Dissemination of Antimicrobial-Resistance Determinants: Review and In Silico Analysis
Cited by: 9
Author(s): Philip Kartalidis, Anargyros Skoulakis, Katerina Tsilipounidaki, Zoi Florou, Efthymia Petinaki, George C. Fthenakis
Software Mentions: 1
Published: about 3 years ago