Ecosyste.ms: Papers

An open API service providing mapping between scientific papers and software projects that are mentioned in them.
All mentions data is based on the CZI Software Mentions dataset.

Projects: pypi: dammit

https://packages.ecosyste.ms/registries/pypi.org/packages/dammit

dammit!
31 versions
Latest release: over 6 years ago
59 downloads last month

Papers Mentioning dammit 14

Tximeta: Reference sequence checksums for provenance identification in RNA-seq
Cited by: 122
Author(s): Michael I. Love, Charlotte Soneson, Peter Hickey, Lisa K. Johnson, Nicholas Pierce, Lori Shepherd, Martin Morgan, Rob Patro
Software Mentions: 19
Published: over 4 years ago

10.3389/fmicb.2021.607289

The Relationship Between Microbiomes and Selective Regimes in the Sponge Genus Ircinia
Cited by: 5
Author(s): J. B. Kelly, David E. Carlson, Jun Siong Low, Tyler Rice, Robert Thacker
Software Mentions: 7
Published: over 3 years ago

10.1093/gigascience/giy158

Re-assembly, quality evaluation, and annotation of 678 microbial eukaryotic reference transcriptomes
Cited by: 51
Author(s): Lisa K. Johnson, Harriet Alexander, C. Titus Brown
Software Mentions: 6
Published: almost 6 years ago

10.3390/genes11121487

RNAflow: An Effective and Simple RNA-Seq Differential Gene Expression Pipeline Using Nextflow
Cited by: 13
Author(s): Marie Lataretu, Martin Hölzer
Software Mentions: 6
Published: almost 4 years ago

10.1093/conphys/coz018

Tracking transcriptomic responses to endogenous and exogenous variation in cetaceans in the Southern California Bight
Cited by: 8
Author(s): Marisa L. Trego, Andrew Whitehead, Nicholas M. Kellar, Morgane Lauf, Rebecca L. Lewison
Software Mentions: 6
Published: over 5 years ago

10.1534/g3.118.200852

Tissue-Specific Transcriptome Analysis Reveals Candidate Genes for Terpenoid and Phenylpropanoid Metabolism in the Medicinal Plant <i>Ferula assafoetida</i>
Cited by: 21
Author(s): Hajar Amini, Mohammad Reza Naghavi, Tong Shen, Yanhong Wang, Jaber Nasiri, Ikhlas A. Khan, Oliver Fiehn, Philipp Zerbe, Julin Maloof
Software Mentions: 5
Published: over 5 years ago

10.1038/srep45125

Widespread patterns of sexually dimorphic gene expression in an avian hypothalamic–pituitary–gonadal (HPG) axis
Cited by: 42
Author(s): Matthew D. MacManes, Suzanne H. Austin, Andrew S. Lang, April M. Booth, Victoria S. Farrar, Rebecca M. Calisi
Software Mentions: 4
Published: over 7 years ago

10.1186/s12864-017-3840-1

Characterizing the reproductive transcriptomic correlates of acute dehydration in males in the desert-adapted rodent, Peromyscus eremicus
Cited by: 9
Author(s): Lauren Kordonowy, Matthew D. MacManes
Software Mentions: 4
Published: about 7 years ago

10.1038/s41598-017-16371-9

Comparative Genomics of Color Morphs In the Coral Montastraea cavernosa
Cited by: 9
Author(s): Jessica K. Jarett, Matthew D. MacManes, Kathleen M. Morrow, M. Sabrina Pankey, Michael P. Lesser
Software Mentions: 3
Published: almost 7 years ago

10.1371/journal.pone.0251668

De novo transcriptome assembly of the green alga Ankistrodesmus falcatus
Cited by: 6
Author(s): Rachel A. Schomaker, Jeffry L. Dudycha
Software Mentions: 2
Published: over 3 years ago

10.7717/peerj.2098

Characterizing the adult and larval transcriptome of the multicolored Asian lady beetle,Harmonia axyridis
Cited by: 4
Author(s): Lindsay Havens, Matthew D. MacManes
Software Mentions: 2
Published: over 8 years ago

10.1111/jeu.12727

Differential Gene Expression Supports a Resource‐Intensive, Defensive Role for Colony Production in the Bloom‐Forming Haptophyte,<i>Phaeocystis globosa</i>
Cited by: 20
Author(s): Margaret Mars Brisbin, Satoshi Mitarai
Software Mentions: 1
Published: over 5 years ago

10.7717/peerj.2617

Characterization of a male reproductive transcriptome forPeromyscus eremicus(Cactus mouse)
Cited by: 8
Author(s): Lauren Kordonowy, Matthew D. MacManes
Software Mentions: 1
Published: almost 8 years ago

10.1186/s12864-019-5886-8

RNA-Seq analysis of soft rush (Juncus effusus): transcriptome sequencing, de novo assembly, annotation, and polymorphism identification
Cited by: 6
Author(s): Muhammad Arslan, Upendra Kumar Devisetty, Martin Porsch, Ivo Große, Jochen A. Müller, Stefan G. Michalski
Software Mentions: 1
Published: over 5 years ago