Data

Tools

Indexes

Applications

Experiments

Papers

An open API service providing mapping between scientific papers and software projects that are mentioned in them.

Papers: 10.3390/genes11121487

https://doi.org/10.3390/genes11121487

RNAflow: An Effective and Simple RNA-Seq Differential Gene Expression Pipeline Using Nextflow

Cited by: 13
Author(s): Marie Lataretu, Martin Hölzer
Published: over 4 years ago

Software Mentions 6

bioconductor: DESeq2
Differential gene expression analysis based on the negative binomial distribution
Papers that mentioned: 9,583
Very Likely Science (100)
bioconductor: EnhancedVolcano
Publication-ready volcano plots with enhanced colouring and labeling
Papers that mentioned: 123
Very Likely Science (100)
bioconductor: limma
Linear Models for Microarray Data
Papers that mentioned: 7,776
Very Likely Science (78)
pypi: dammit
dammit!
Papers that mentioned: 14
Very Likely Science (100)
pypi: kallisto
The Kallisto software enables the efficient calculation of atomic features that can be used within a quantitative structure-activity relationship (QSAR) approach. Furthermore, several modelling helpers are implemented.
Papers that mentioned: 307
Very Likely Science (100)
pypi: nf-core
Helper tools for use with nf-core Nextflow pipelines.
Papers that mentioned: 18
Very Likely Science (100)