Ecosyste.ms: Papers
An open API service providing mapping between scientific papers and software projects that are mentioned in them.
All mentions data is based on the CZI Software Mentions dataset.
Projects: pypi: glpk
https://packages.ecosyste.ms/registries/pypi.org/packages/glpk
PyGLPK, a Python module encapsulating GLPK.
5 versions
Latest release: over 1 year ago
4 dependent packages
127,719 downloads last month
Papers Mentioning glpk 14
10.1186/1471-2148-10-360
Assembling networks of microbial genomes using linear programmingCited by: 6
Author(s): Catherine Holloway, Robert G. Beiko
Software Mentions: 3
Published: over 14 years ago
10.31557/APJCP.2020.21.12.3539
Omics Integration Analysis Unravel the Landscape of Driving Mechanisms of Colorectal CancerCited by: 6
Author(s): Fatemeh Nikmanesh, Shamim Sarhadi, Mehdi Dadashpour, Yazdan Asghari
Software Mentions: 3
Published: almost 4 years ago
10.3390/metabo5040794
Flux Balance Analysis Inspired Bioprocess Upgrading for Lycopene Production by a Metabolically Engineered Strain of Yarrowia lipolyticaCited by: 28
Author(s): Komi Nambou, Xingxing Jian, Xinkai Zhang, Liujing Wei, Jiajia Lou, Catherine Madzak, Qiang Hua
Software Mentions: 3
Published: over 8 years ago
10.1186/s12918-016-0329-5
Identification of key player genes in gene regulatory networksCited by: 32
Author(s): Maryam Nazarieh, Andreas Wiese, Thorsten Will, Mohamed Hamed, Volkhard Helms
Software Mentions: 3
Published: about 8 years ago
10.3390/metabo10050177
Biochemical Characteristics and a Genome-Scale Metabolic Model of an Indian Euryhaline Cyanobacterium with High Polyglucan ContentCited by: 9
Author(s): Ahmad Ahmad, Ruchi Pathania, Shireesh Srivastava
Software Mentions: 2
Published: over 4 years ago
10.1186/1752-0509-6-153
Reconstruction of genome-scale metabolic models for 126 human tissues using mCADRECited by: 233
Author(s): Yuliang Wang, James A. Eddy, Nathan D. Price
Software Mentions: 2
Published: almost 12 years ago
10.1186/1752-0509-5-167
A computational exploration of bacterial metabolic diversity identifying metabolic interactions and growth-efficient strain communitiesCited by: 41
Author(s): Eleftheria Tzamali, Panayiota Poirazi, Ioannis G. Tollis, Martin Reczko
Software Mentions: 2
Published: over 13 years ago
10.15252/msb.20156157
Do genome‐scale models need exact solvers or clearer standards?Cited by: 53
Author(s): Ali Ebrahim, Eivind Almaas, Eugen Bauer, Aarash Bordbar, Anthony P. Burgard, Roger L. Chang, Andreas Dräger, Imam Famili, Adam M. Feist, Ronan M. T. Fleming, Stephen S. Fong, Vassily Hatzimanikatis, Markus J. Herrgård, Allen Holder, Michael Hucka, Daniel R. Hyduke, Neema Jamshidi, Sang Yup Lee, Nicolas Le Novère, Joshua A. Lerman, Nathan E. Lewis, Ding Ma, Radhakrishnan Mahadevan, Costas D. Maranas, Harish Nagarajan, Ali Navid, Jens Nielsen, Lars K. Nielsen, Juan Nogales, Alberto Noronha, Csaba Pál, Bernhard Ø. Palsson, Jason A. Papin, Kiran Raosaheb Patil, Nathan D. Price, Jennifer L. Reed, Michael A. Saunders, Ryan S. Senger, Nikolaus Sonnenschein, Yuekai Sun, Ines Thiele
Software Mentions: 2
Published: almost 9 years ago
10.1186/1471-2164-12-535
In vivo and in silico determination of essential genes of Campylobacter jejuniCited by: 41
Author(s): Aline Métris, Mark Reuter, Duncan J. H. Gaskin, József Baranyi, Arnoud H. M. van Vliet
Software Mentions: 1
Published: almost 13 years ago
10.1186/1475-2859-10-70
Engineering strategy of yeast metabolism for higher alcohol productionCited by: 43
Author(s): Fumio Mizutani, Chikara Furusawa, Takashi Kondo, Jun Ishii, Hiroshi Shimizu, Akihiko Kondo
Software Mentions: 1
Published: about 13 years ago
10.1371/journal.pone.0029165
Gene Regulatory Network Reconstruction Using Bayesian Networks, the Dantzig Selector, the Lasso and Their Meta-AnalysisCited by: 86
Author(s): Matthieu Vignes, Jimmy Vandel, David Allouche, Nidal Ramadan-Alban, Christine Cierco-Ayrolles, Thomas Schiex, Brigitte Mangin, Simon de Givry
Software Mentions: 1
Published: over 12 years ago
10.1371/journal.pone.0158569
FISHtrees 3.0: Tumor Phylogenetics Using a Ploidy ProbeCited by: 11
Author(s): E. Michael Gertz, Saiful M. Chowdhury, Woei-Jyh Lee, Darawalee Wangsa, Kerstin Heselmeyer‐Haddad, Thomas Ried, Russell Schwartz, Alejandro A. Schäffer
Software Mentions: 1
Published: about 8 years ago
10.1371/journal.pone.0190636
Genome scale metabolic models as tools for drug design and personalized medicineCited by: 35
Author(s): Vytautas Raškevičius, Valeryia Mikalayeva, Ieva Antanavičiūtė, Ieva Ceslevičienė, Vytenis Arvydas Skeberdis, Visvaldas Kairys, Sergio Bordel
Software Mentions: 1
Published: over 6 years ago
10.1186/1752-0509-5-163
An experimentally-supported genome-scale metabolic network reconstruction for Yersinia pestis CO92Cited by: 34
Author(s): Pep Charusanti, Sanjay Chauhan, Kathleen McAteer, Joshua A. Lerman, Daniel R. Hyduke, Vladimir L. Motin, Charles Ansong, Joshua N. Adkins, Bernhard Ø. Palsson
Software Mentions: 1
Published: over 13 years ago