Ecosyste.ms: Papers

An open API service providing mapping between scientific papers and software projects that are mentioned in them.
All mentions data is based on the CZI Software Mentions dataset.

Projects: pypi: gseapy

https://packages.ecosyste.ms/registries/pypi.org/packages/gseapy

Gene Set Enrichment Analysis in Python
36 versions
Latest release: about 1 year ago
27 dependent packages
8,735 downloads last month

Papers Mentioning gseapy 14

HLA Ligand Atlas: a benign reference of HLA-presented peptides to improve T-cell-based cancer immunotherapy
Cited by: 109
Author(s): Ana Marcu, Leon Bichmann, Lèon Kuchenbecker, Daniel J. Kowalewski, Lena Katharina Freudenmann, Linus Backert, Lena Mühlenbruch, András Szolek, Maren Lübke, Philipp Wagner, Tobias Engler, Sabine Matovina, Jian Wang, Mathias Hauri-Hohl, Thierry Martin, Konstantina Kapolou, Juliane S. Walz, Julia Velz, Holger Moch, Luca Regli, Manuela Silginer, Michael Weller, Markus Löffler, Florian Erhard, Andreas Schlösser, Oliver Kohlbacher, Stefan Stevanović, Hans Georg Rammensee, Marian C. Neidert
Software Mentions: 8
Published: over 3 years ago

10.1186/s12859-021-04126-3

Modeling transcriptional regulation using gene regulatory networks based on multi-omics data sources
Cited by: 6
Author(s): Neel Patel, William S. Bush
Software Mentions: 7
Published: over 3 years ago

10.15252/msb.20198871

Paralog dependency indirectly affects the robustness of human cells
Cited by: 40
Author(s): Rohan Dandage, Christian R. Landry
Software Mentions: 6
Published: about 5 years ago

10.1080/22221751.2020.1799723

Dysregulation in Akt/mTOR/HIF-1 signaling identified by proteo-transcriptomics of SARS-CoV-2 infected cells
Cited by: 203
Author(s): Sofia Appelberg, Soham Gupta, Sara Svensson Akusjärvi, Anoop T. Ambikan, Flora Mikaeloff, Elisa Saccon, Ákos Végvári, Rui Benfeitas, Maike Sperk, Marie Ståhlberg, Shuba Krishnan, Kamal Singh, Josef Penninger, Alì Mirazimi, Ujjwal Neogi
Software Mentions: 6
Published: almost 5 years ago

10.3389/fgene.2021.652623

Construction of Condition-Specific Gene Regulatory Network Using Kernel Canonical Correlation Analysis
Cited by: 2
Author(s): Dabin Jeong, Sangsoo Lim, Sangseon Lee, Minsik Oh, Changyun Cho, Hyeju Seong, Wi Hoon Jung, Sun Kim
Software Mentions: 5
Published: over 3 years ago

10.3389/fnins.2020.00822

A Panel of Synapse-Related Genes as a Biomarker for Gliomas
Cited by: 3
Author(s): Xiangwen Ji, Hongwei Zhang, Qinghua Cui
Software Mentions: 5
Published: about 4 years ago

10.1093/gigascience/giaa136

Identification of a differentiation stall in epithelial mesenchymal transition in histone H3–mutant diffuse midline glioma
Cited by: 8
Author(s): Lauren Sanders, Allison Cheney, Lucas Seninge, Anouk van den Bout, Marissa Chen, Holly C. Beale, Ellen Kephart, Jacob Pfeil, Katrina Learned, A. Geoffrey Lyle, Isabel Bjork, David Haussler, Sofie R. Salama, Olena M. Vaske
Software Mentions: 4
Published: almost 4 years ago

10.1002/cam4.2035

Dysregulation, functional implications, and prognostic ability of the circadian clock across cancers
Cited by: 19
Author(s): Yi Li, Kai Yu, Jian Zheng, Huan Lin, Qi Zhao, Xiaolong Zhang, Wei Feng, Li-Yu Wang, Jianjun Xu, Dawei Xie, Zhixiang Zuo, Zexian Liu, Qi Zheng
Software Mentions: 4
Published: over 5 years ago

10.26508/lsa.201900517

Evaluation of colorectal cancer subtypes and cell lines using deep learning
Cited by: 59
Author(s): Jonathan Ronen, Sikander Hayat, Altuna Akalin
Software Mentions: 4
Published: almost 5 years ago

10.1172/jci.insight.149232

Nonredundant, isoform-specific roles of HDAC1 in glioma stem cells
Cited by: 10
Author(s): Costanza Lo Cascio, James B. McNamara, Ernesto Luna Melendez, Erika M. Lewis, Matthew E. Dufault, Nader Sanai, Christopher Plaisier, Shwetal Mehta
Software Mentions: 3
Published: about 3 years ago

10.7554/eLife.38986

Abnormal oxidative metabolism in a quiet genomic background underlies clear cell papillary renal cell carcinoma
Cited by: 34
Author(s): Jianing Xu, Ed Reznik, Ho‐Joon Lee, Gunes Gundem, Philip Jonsson, Judy Sarungbam, Anna Bialik, Francisco Sanchez‐Vega, Chad J. Creighton, Jake G. Hoekstra, Li Zhang, Peter Sajjakulnukit, Daniel M. Kremer, Zachary P. Tolstyka, Jozefina Casuscelli, Steve Stirdivant, Jie Tang, Nikolaus Schultz, Paul S Jeng, Yiyu Dong, Wenjing Su, Emily H. Cheng, Paul Russo, Jonathan Coleman, Elli Papaemmanuil, Ying-Bei Chen, Victor E. Reuter, Chris Sander, Scott R. Kennedy, James J. Hsieh, Costas A. Lyssiotis, Satish K. Tickoo, A. Ari Hakimi
Software Mentions: 2
Published: over 5 years ago

10.3389/fcell.2021.647197

Revisiting the Relationship Between Alzheimer’s Disease and Cancer With a circRNA Perspective
Cited by: 5
Author(s): Danze Chen, Shijia Hao, Jianzhen Xu
Software Mentions: 2
Published: over 3 years ago

10.1111/jcmm.15347

Ancient genes can be served as pan‐cancer diagnostic and prognostic biomarkers
Cited by: 2
Author(s): Xiangwen Ji, Qinghua Cui
Software Mentions: 2
Published: over 4 years ago

10.1186/s12859-020-3524-8

Computational identification of biomarker genes for lung cancer considering treatment and non-treatment studies
Cited by: 5
Author(s): Mona Maharjan, Raihanul Bari Tanvir, Kamal Chowdhury, Wenrui Duan, Ananda Mohan Mondal
Software Mentions: 1
Published: almost 4 years ago