Ecosyste.ms: Papers

An open API service providing mapping between scientific papers and software projects that are mentioned in them.
All mentions data is based on the CZI Software Mentions dataset.

Projects: pypi: yaml

https://packages.ecosyste.ms/registries/pypi.org/packages/yaml

Papers Mentioning yaml 14

Predictive features of gene expression variation reveal mechanistic link with differential expression
Cited by: 36
Author(s): Olga M. Sigalova, Amirreza Shaeiri, Mattia Forneris, Eileen E. M. Furlong, Judith B. Zaugg
Software Mentions: 30
Published: about 4 years ago

10.3389/fgene.2019.00594

BioNetStat: A Tool for Biological Networks Differential Analysis
Cited by: 21
Author(s): Vinícius Carvalho Jardim, Suzana de Siqueira Santos, André Fujita, Marcos Silveira Buckeridge
Software Mentions: 22
Published: about 5 years ago

10.7717/peerj.4278

Forecasting biodiversity in breeding birds using best practices
Cited by: 37
Author(s): David J. Harris, Shawn D. Taylor, Ethan P. White
Software Mentions: 21
Published: over 6 years ago

10.3390/ijms21186652

Identification of Gastritis Subtypes by Convolutional Neuronal Networks on Histological Images of Antrum and Corpus Biopsies
Cited by: 15
Author(s): Georg Steinbuß, Katharina Kriegsmann, Mark Kriegsmann
Software Mentions: 19
Published: about 4 years ago

10.12688/gatesopenres.12832.2

DataPackageR: Reproducible data preprocessing, standardization and sharing using R/Bioconductor for collaborative data analysis
Cited by: 7
Author(s): Greg Finak, Bryan T. Mayer, William J. Fulp, Paul Obrecht, Alicia Sato, Eva Yin-han Chung, Drienna Holman, Raphaël Gottardo
Software Mentions: 19
Published: about 6 years ago

10.1371/journal.pone.0135831

CoGA: An R Package to Identify Differentially Co-Expressed Gene Sets by Analyzing the Graph Spectra
Cited by: 18
Author(s): Suzana de Siqueira Santos, Thais Fernanda de Almeida Galatro, Rodrigo Akira Watanabe, Sueli Mieko Oba-Shinjo, Suely Kazue Nagahashi Marie, André Fujita
Software Mentions: 17
Published: about 9 years ago

10.7717/peerj.11376

ProkEvo: an automated, reproducible, and scalable framework for high-throughput bacterial population genomics analyses
Cited by: 4
Author(s): Natasha Pavlovikj, João Carlos Gomes-Neto, Jitender S. Deogun, Andrew K. Benson
Software Mentions: 12
Published: over 3 years ago

10.3389/fmicb.2020.570985

Differently Pre-treated Rapeseed Meals Affect in vitro Swine Gut Microbiota Composition
Cited by: 8
Author(s): Long Cheng, S. de Vries, Koen Venema
Software Mentions: 11
Published: about 4 years ago

10.1186/s13059-021-02440-w

Bedshift: perturbation of genomic interval sets
Cited by: 5
Author(s): Aaron Gu, Hyun-Jae Cho, Nathan C. Sheffield
Software Mentions: 6
Published: about 3 years ago

10.1093/molbev/msz280

Genetic Landscapes Reveal How Human Genetic Diversity Aligns with Geography
Cited by: 38
Author(s): Benjamin M. Peter, Desislava Petkova, John Novembre
Software Mentions: 4
Published: almost 5 years ago

10.3390/molecules26061793

Quantum Chemical Microsolvation by Automated Water Placement
Cited by: 17
Author(s): Miguel Steiner, Tanja Holzknecht, Michael Schauperl, Maren Podewitz
Software Mentions: 3
Published: over 3 years ago

10.3390/ijms20133155

GPathFinder: Identification of Ligand-Binding Pathways by a Multi-Objective Genetic Algorithm
Cited by: 13
Author(s): José-Emilio Sánchez-Aparicio, Giuseppe Sciortino, Daniel Viladrich Herrmannsdoerfer, Pablo Orenes Chueca, Jaime Rodríguez-Guerra Pedregal, Jean‐Didier Maréchal
Software Mentions: 3
Published: about 5 years ago

10.7717/peerj.4958

D-GENIES: dot plot large genomes in an interactive, efficient and simple way
Cited by: 372
Author(s): Floréal Cabanettes, Christophe Klopp
Software Mentions: 3
Published: over 6 years ago

10.3390/s16101668

Effective World Modeling: Multisensor Data Fusion Methodology for Automated Driving
Cited by: 29
Author(s): Jos Elfring, Rpw Rein Appeldoorn, S Sjoerd van den Dries, Mrjae Maurice Kwakkernaat
Software Mentions: 2
Published: almost 8 years ago