Ecosyste.ms: Papers

An open API service providing mapping between scientific papers and software projects that are mentioned in them.
All mentions data is based on the CZI Software Mentions dataset.

Papers: 10.1371/journal.pone.0135831

https://doi.org/10.1371/journal.pone.0135831

CoGA: An R Package to Identify Differentially Co-Expressed Gene Sets by Analyzing the Graph Spectra

Cited by: 18
Author(s): Suzana de Siqueira Santos, Thais Fernanda de Almeida Galatro, Rodrigo Akira Watanabe, Sueli Mieko Oba-Shinjo, Suely Kazue Nagahashi Marie, André Fujita
Published: over 9 years ago

Software Mentions 17

bioconductor: GSCA

GSCA: Gene Set Context Analysis
Papers that mentioned: 40

cran: ggplot2

Create Elegant Data Visualisations Using the Grammar of Graphics
Papers that mentioned: 11,441

cran: Hmisc

Harrell Miscellaneous
Papers that mentioned: 1,000

cran: igraph

Network Analysis and Visualization
Papers that mentioned: 1,555

cran: pheatmap

Pretty Heatmaps
Papers that mentioned: 2,572

cran: psych

Procedures for Psychological, Psychometric, and Personality Research
Papers that mentioned: 1,085

cran: RColorBrewer

ColorBrewer Palettes
Papers that mentioned: 490

cran: RJSONIO

Serialize R Objects to JSON, JavaScript Object Notation
Papers that mentioned: 10

cran: shiny

Web Application Framework for R
Papers that mentioned: 127

cran: shinyBS

Twitter Bootstrap Components for Shiny
Papers that mentioned: 15

cran: WGCNA

Weighted Correlation Network Analysis
Papers that mentioned: 3,479

cran: whisker

{{mustache}} for R, Logicless Templating
Papers that mentioned: 2

cran: yaml

Methods to Convert R Data to YAML and Back
Papers that mentioned: 14

pypi: igraph

High performance graph data structures and algorithms
Papers that mentioned: 1,555

pypi: shiny

A web development framework for Python.
Papers that mentioned: 127

pypi: whisker

Whisker Python client library
Papers that mentioned: 2

pypi: yaml

Papers that mentioned: 14